Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C7M27_RS13525 Genome accession   NZ_CP028213
Coordinates   2595267..2595845 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM102749     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2590267..2600845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS13490 (C7M27_02670) lepB 2590274..2590780 (-) 507 WP_003233128.1 signal peptidase I -
  C7M27_RS13495 (C7M27_02671) yhjE 2590782..2591405 (-) 624 WP_010886465.1 VTT domain-containing protein -
  C7M27_RS13500 (C7M27_02672) - 2591557..2591928 (+) 372 WP_064671203.1 hypothetical protein -
  C7M27_RS13505 (C7M27_02673) yhjC 2592127..2592327 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C7M27_RS13510 (C7M27_02674) yhjB 2592324..2593793 (+) 1470 WP_072175677.1 sodium:solute symporter -
  C7M27_RS13515 (C7M27_02675) yhjA 2593837..2594106 (-) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  C7M27_RS13520 (C7M27_02676) yhxD 2594323..2595222 (+) 900 WP_128740182.1 SDR family oxidoreductase -
  C7M27_RS13525 (C7M27_02677) comK 2595267..2595845 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  C7M27_RS13530 (C7M27_02678) yhzC 2596138..2596371 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  C7M27_RS13535 (C7M27_02679) yhxC 2596399..2597256 (-) 858 WP_021479616.1 SDR family oxidoreductase -
  C7M27_RS13540 (C7M27_02680) comW 2597368..2598897 (+) 1530 WP_128740181.1 FAD-dependent oxidoreductase -
  C7M27_RS13545 (C7M27_02681) hemAT 2599036..2600334 (+) 1299 WP_049140766.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=283199 C7M27_RS13525 WP_003245329.1 2595267..2595845(-) (comK) [Bacillus subtilis strain SRCM102749]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=283199 C7M27_RS13525 WP_003245329.1 2595267..2595845(-) (comK) [Bacillus subtilis strain SRCM102749]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCACGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment