Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C7M27_RS06905 Genome accession   NZ_CP028213
Coordinates   1325208..1325828 (-) Length   206 a.a.
NCBI ID   WP_070547480.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1320208..1330828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS06885 (C7M27_01361) dnaD 1320496..1321194 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  C7M27_RS06890 (C7M27_01362) nth 1321213..1321872 (+) 660 WP_009967580.1 endonuclease III -
  C7M27_RS06895 (C7M27_01363) ypoC 1321869..1322363 (+) 495 WP_009967579.1 YpoC family protein -
  C7M27_RS06900 (C7M27_01364) ponA 1322439..1325186 (-) 2748 WP_128740546.1 PBP1A family penicillin-binding protein -
  C7M27_RS06905 (C7M27_01365) recU 1325208..1325828 (-) 621 WP_070547480.1 Holliday junction resolvase RecU Machinery gene
  C7M27_RS06910 (C7M27_01366) yppC 1325869..1326831 (+) 963 WP_021481527.1 DUF2515 domain-containing protein -
  C7M27_RS06915 (C7M27_01367) sspM 1326856..1326960 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C7M27_RS06920 (C7M27_01368) yppD 1327159..1327404 (+) 246 WP_021481526.1 DUF5446 family protein -
  C7M27_RS06925 (C7M27_01369) yppE 1327450..1327821 (+) 372 WP_021481525.1 YppE family protein -
  C7M27_RS06930 (C7M27_01370) yppF 1327860..1328048 (-) 189 WP_003230690.1 YppF family protein -
  C7M27_RS06935 (C7M27_01371) sppG 1328236..1328613 (+) 378 WP_015251832.1 YppG family protein -
  C7M27_RS06940 (C7M27_01372) ypqA 1328634..1329053 (-) 420 WP_038828605.1 Hsp20/alpha crystallin family protein -
  C7M27_RS06945 (C7M27_01373) ptsA 1329191..1329697 (+) 507 WP_015483368.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23987.14 Da        Isoelectric Point: 9.6240

>NTDB_id=283180 C7M27_RS06905 WP_070547480.1 1325208..1325828(-) (recU) [Bacillus subtilis strain SRCM102749]
MIRYPNGKTFQPKHSVSSQNSQKRVPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=283180 C7M27_RS06905 WP_070547480.1 1325208..1325828(-) (recU) [Bacillus subtilis strain SRCM102749]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGTCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment