Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C7M27_RS05405 Genome accession   NZ_CP028213
Coordinates   1059284..1060051 (+) Length   255 a.a.
NCBI ID   WP_049141200.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1054284..1065051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS05375 (C7M27_01057) pgpH 1054580..1056715 (+) 2136 WP_080121334.1 cyclic-di-AMP phosphodiesterase PgpH -
  C7M27_RS05380 (C7M27_01058) ybeY 1056716..1057189 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  C7M27_RS05385 (C7M27_01059) unpK 1057170..1057541 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  C7M27_RS05390 (C7M27_01060) - 1057660..1058070 (+) 411 WP_003230049.1 cytidine deaminase -
  C7M27_RS05395 (C7M27_01061) era 1058051..1058956 (+) 906 WP_003230051.1 GTPase Era -
  C7M27_RS05400 (C7M27_01062) yqzL 1059104..1059247 (+) 144 WP_003230053.1 YqzL family protein -
  C7M27_RS05405 (C7M27_01063) recO 1059284..1060051 (+) 768 WP_049141200.1 DNA repair protein RecO Machinery gene
  C7M27_RS05410 (C7M27_01064) glyQ 1060349..1061236 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  C7M27_RS05415 (C7M27_01065) glyS 1061229..1063268 (+) 2040 WP_128740578.1 glycine--tRNA ligase subunit beta -
  C7M27_RS05420 (C7M27_01066) ccpN 1063401..1064039 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  C7M27_RS05425 (C7M27_01067) ppsR 1064065..1064877 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29326.05 Da        Isoelectric Point: 8.3080

>NTDB_id=283168 C7M27_RS05405 WP_049141200.1 1059284..1060051(+) (recO) [Bacillus subtilis strain SRCM102749]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGAFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=283168 C7M27_RS05405 WP_049141200.1 1059284..1060051(+) (recO) [Bacillus subtilis strain SRCM102749]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTGCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment