Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C7M27_RS04225 Genome accession   NZ_CP028213
Coordinates   849678..850424 (+) Length   248 a.a.
NCBI ID   WP_021480242.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 844678..855424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS04210 (C7M27_00835) - 844904..845095 (-) 192 WP_003222590.1 hypothetical protein -
  C7M27_RS04215 (C7M27_00836) valS 845543..848185 (+) 2643 WP_128740606.1 valine--tRNA ligase -
  C7M27_RS04220 (C7M27_00837) folC 848245..849537 (+) 1293 WP_128740605.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C7M27_RS04225 (C7M27_00838) comC 849678..850424 (+) 747 WP_021480242.1 A24 family peptidase Machinery gene
  C7M27_RS04230 (C7M27_00839) spoIIB 850558..851556 (+) 999 WP_128740604.1 stage II sporulation protein SpoIIB -
  C7M27_RS04235 (C7M27_00840) maf 851710..852279 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C7M27_RS04240 (C7M27_00841) radC 852316..853011 (+) 696 WP_021480240.1 DNA repair protein RadC -
  C7M27_RS04245 (C7M27_00842) mreB 853103..854116 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C7M27_RS04250 (C7M27_00843) mreC 854147..855019 (+) 873 WP_009967915.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26390.98 Da        Isoelectric Point: 9.7803

>NTDB_id=283160 C7M27_RS04225 WP_021480242.1 849678..850424(+) (comC) [Bacillus subtilis strain SRCM102749]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=283160 C7M27_RS04225 WP_021480242.1 849678..850424(+) (comC) [Bacillus subtilis strain SRCM102749]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment