Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C7M26_RS21445 Genome accession   NZ_CP028212
Coordinates   4109762..4110508 (+) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102748     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4104762..4115508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS21430 (C7M26_04223) - 4104987..4105178 (-) 192 WP_003222590.1 hypothetical protein -
  C7M26_RS21435 (C7M26_04224) valS 4105626..4108268 (+) 2643 WP_004398606.1 valine--tRNA ligase -
  C7M26_RS21440 (C7M26_04225) folC 4108328..4109620 (+) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C7M26_RS21445 (C7M26_04226) comC 4109762..4110508 (+) 747 WP_072592551.1 A24 family peptidase Machinery gene
  C7M26_RS21450 (C7M26_04227) spoIIB 4110642..4111640 (+) 999 WP_015714459.1 stage II sporulation protein SpoIIB -
  C7M26_RS21455 (C7M26_04228) maf 4111793..4112362 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C7M26_RS21460 (C7M26_04229) radC 4112399..4113094 (+) 696 WP_003246034.1 DNA repair protein RadC -
  C7M26_RS21465 (C7M26_04230) mreB 4113186..4114199 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C7M26_RS21470 (C7M26_04231) mreC 4114230..4115102 (+) 873 WP_009967915.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=283142 C7M26_RS21445 WP_072592551.1 4109762..4110508(+) (comC) [Bacillus subtilis strain SRCM102748]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=283142 C7M26_RS21445 WP_072592551.1 4109762..4110508(+) (comC) [Bacillus subtilis strain SRCM102748]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment