Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C7M26_RS12400 Genome accession   NZ_CP028212
Coordinates   2358852..2359301 (+) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain SRCM102748     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2353852..2364301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS12380 (C7M26_02441) hxlR 2355062..2355424 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  C7M26_RS12385 (C7M26_02442) hxlA 2355657..2356289 (+) 633 WP_032722903.1 3-hexulose-6-phosphate synthase -
  C7M26_RS12390 (C7M26_02443) hxlB 2356295..2356852 (+) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  C7M26_RS12395 (C7M26_02444) tlpC 2356963..2358684 (+) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  C7M26_RS12400 (C7M26_02445) nucA/comI 2358852..2359301 (+) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  C7M26_RS12405 (C7M26_02446) nin/comJ 2359328..2359726 (+) 399 WP_032722902.1 DNA-entry nuclease inhibitor Regulator
  C7M26_RS12410 (C7M26_02447) bglC 2359763..2361196 (-) 1434 WP_032722901.1 6-phospho-beta-glucosidase -
  C7M26_RS12415 (C7M26_02448) yckD 2361349..2361681 (-) 333 WP_015252849.1 YckD family protein -
  C7M26_RS12420 - 2361763..2362083 (-) 321 Protein_2471 RDD family protein -
  C7M26_RS12425 - 2362119..2362311 (-) 193 Protein_2472 hypothetical protein -
  C7M26_RS12430 (C7M26_02449) yckB 2362473..2363336 (+) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  C7M26_RS12435 (C7M26_02450) yckA 2363346..2364026 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=283113 C7M26_RS12400 WP_003234608.1 2358852..2359301(+) (nucA/comI) [Bacillus subtilis strain SRCM102748]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=283113 C7M26_RS12400 WP_003234608.1 2358852..2359301(+) (nucA/comI) [Bacillus subtilis strain SRCM102748]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment