Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C7M26_RS08855 Genome accession   NZ_CP028212
Coordinates   1651126..1651704 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102748     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1646126..1656704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS08820 (C7M26_01740) lepB 1646132..1646638 (-) 507 WP_032721278.1 signal peptidase I -
  C7M26_RS08825 (C7M26_01741) yhjE 1646640..1647263 (-) 624 WP_010886465.1 VTT domain-containing protein -
  C7M26_RS08830 (C7M26_01742) - 1647415..1647777 (+) 363 WP_024571727.1 hypothetical protein -
  C7M26_RS08835 (C7M26_01743) yhjC 1647985..1648185 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C7M26_RS08840 (C7M26_01744) yhjB 1648182..1649651 (+) 1470 WP_032721274.1 sodium:solute symporter -
  C7M26_RS08845 (C7M26_01745) yhjA 1649694..1649963 (-) 270 WP_160214997.1 excalibur calcium-binding domain-containing protein -
  C7M26_RS08850 (C7M26_01746) yhxD 1650180..1651079 (+) 900 WP_032721273.1 SDR family oxidoreductase -
  C7M26_RS08855 (C7M26_01747) comK 1651126..1651704 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  C7M26_RS08860 (C7M26_01748) yhzC 1651997..1652230 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  C7M26_RS08865 (C7M26_01749) yhxC 1652258..1653115 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  C7M26_RS08870 (C7M26_01750) comW 1653227..1654756 (+) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  C7M26_RS08875 (C7M26_01751) hemAT 1654895..1656193 (+) 1299 WP_032721925.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=283103 C7M26_RS08855 WP_029317573.1 1651126..1651704(-) (comK) [Bacillus subtilis strain SRCM102748]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=283103 C7M26_RS08855 WP_029317573.1 1651126..1651704(-) (comK) [Bacillus subtilis strain SRCM102748]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment