Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C7M26_RS02545 Genome accession   NZ_CP028212
Coordinates   431624..432244 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102748     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 426624..437244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS02525 (C7M26_00496) dnaD 426915..427613 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  C7M26_RS02530 (C7M26_00497) nth 427632..428291 (+) 660 WP_009967580.1 endonuclease III -
  C7M26_RS02535 (C7M26_00498) ypoC 428288..428782 (+) 495 WP_009967579.1 YpoC family protein -
  C7M26_RS02540 (C7M26_00499) ponA 428858..431602 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  C7M26_RS02545 (C7M26_00500) recU 431624..432244 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C7M26_RS02550 (C7M26_00501) yppC 432285..433247 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  C7M26_RS02555 (C7M26_00502) sspM 433272..433376 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C7M26_RS02560 (C7M26_00503) yppD 433575..433820 (+) 246 WP_032722030.1 YppD family protein -
  C7M26_RS02565 (C7M26_00504) yppE 433866..434237 (+) 372 WP_003246080.1 YppE family protein -
  C7M26_RS02570 (C7M26_00505) yppF 434276..434464 (-) 189 WP_003230690.1 YppF family protein -
  C7M26_RS02575 (C7M26_00506) sppG 434652..435029 (+) 378 WP_004398696.1 YppG family protein -
  C7M26_RS02580 (C7M26_00507) ypqA 435050..435469 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  C7M26_RS02585 (C7M26_00508) ptsA 435607..436113 (+) 507 WP_026009842.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=283083 C7M26_RS02545 WP_004399067.1 431624..432244(-) (recU) [Bacillus subtilis strain SRCM102748]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=283083 C7M26_RS02545 WP_004399067.1 431624..432244(-) (recU) [Bacillus subtilis strain SRCM102748]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment