Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C7M26_RS01565 Genome accession   NZ_CP028212
Coordinates   254218..255021 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102748     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 249218..260021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS01545 (C7M26_00300) yqxC 249328..250173 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  C7M26_RS01550 (C7M26_00301) argR 250271..250720 (+) 450 WP_003230265.1 arginine repressor ArgR -
  C7M26_RS01555 (C7M26_00302) recN 250757..252487 (+) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  C7M26_RS01560 (C7M26_00303) spoIVB 252662..253942 (+) 1281 WP_032722092.1 SpoIVB peptidase -
  C7M26_RS01565 (C7M26_00304) spo0A 254218..255021 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  C7M26_RS01570 (C7M26_00306) yqiG 255486..256604 (-) 1119 WP_032722090.1 NADH-dependent flavin oxidoreductase -
  C7M26_RS01575 - 256677..256829 (-) 153 WP_003230276.1 hypothetical protein -
  C7M26_RS01580 (C7M26_00307) yqiH 257137..257430 (+) 294 WP_003230284.1 lipoprotein -
  C7M26_RS01585 (C7M26_00308) yqiI 257445..258065 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  C7M26_RS01590 (C7M26_00309) glpQB 258144..258875 (+) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=283082 C7M26_RS01565 WP_003226427.1 254218..255021(+) (spo0A) [Bacillus subtilis strain SRCM102748]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=283082 C7M26_RS01565 WP_003226427.1 254218..255021(+) (spo0A) [Bacillus subtilis strain SRCM102748]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment