Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EB817_RS02795 Genome accession   NZ_CP033336
Coordinates   518604..519212 (-) Length   202 a.a.
NCBI ID   WP_115230434.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY165     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 513604..524212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB817_RS02780 (EB817_02785) nadE 513641..514465 (+) 825 WP_115230433.1 ammonia-dependent NAD(+) synthetase -
  EB817_RS02785 (EB817_02790) pepC 514650..515987 (+) 1338 WP_002983616.1 aminopeptidase C -
  EB817_RS02790 (EB817_02795) pbp1a 516452..518617 (-) 2166 WP_031488498.1 penicillin-binding protein PBP1A -
  EB817_RS02795 (EB817_02800) recU 518604..519212 (-) 609 WP_115230434.1 Holliday junction resolvase RecU Machinery gene
  EB817_RS02800 (EB817_02805) - 519293..519808 (+) 516 WP_115230435.1 DUF1273 domain-containing protein -
  EB817_RS02805 (EB817_02810) gpsB 519930..520256 (+) 327 WP_002983626.1 cell division regulator GpsB -
  EB817_RS02815 (EB817_02820) - 520701..521855 (+) 1155 WP_111704955.1 class I SAM-dependent RNA methyltransferase -
  EB817_RS02820 (EB817_02825) - 521869..523338 (+) 1470 WP_023079255.1 cell division site-positioning protein MapZ family protein -
  EB817_RS02825 (EB817_02830) - 523483..523965 (-) 483 WP_002988938.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23373.98 Da        Isoelectric Point: 9.9544

>NTDB_id=283070 EB817_RS02795 WP_115230434.1 518604..519212(-) (recU) [Streptococcus pyogenes strain TSPY165]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNNYYLSRQMAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=283070 EB817_RS02795 WP_115230434.1 518604..519212(-) (recU) [Streptococcus pyogenes strain TSPY165]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATAATTATTATTTATCTCGTCAAATGGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCTAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTTGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.761

97.525

0.495

Multiple sequence alignment