Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C7M25_RS04340 Genome accession   NZ_CP028211
Coordinates   854901..855191 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102747     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 849901..860191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M25_RS04325 (C7M25_00867) - 850123..851448 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  C7M25_RS04330 (C7M25_00868) - 851583..852350 (-) 768 WP_025284081.1 TatD family hydrolase -
  C7M25_RS04335 (C7M25_00869) metG 852426..854417 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  C7M25_RS04340 (C7M25_00870) abrB 854901..855191 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  C7M25_RS04345 (C7M25_00871) rsmI 855241..856122 (-) 882 WP_160222794.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C7M25_RS04350 (C7M25_00872) - 856097..856396 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  C7M25_RS04355 (C7M25_00873) - 856383..857126 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C7M25_RS04360 (C7M25_00874) yabA 857187..857546 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  C7M25_RS04365 (C7M25_00875) ricT 857561..858388 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  C7M25_RS04370 (C7M25_00876) holB 858391..859380 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  C7M25_RS04375 (C7M25_00877) - 859392..859832 (-) 441 WP_004264730.1 YaaR family protein -
  C7M25_RS04380 (C7M25_00878) darA 859845..860174 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=283002 C7M25_RS04340 WP_169510469.1 854901..855191(+) (abrB) [Bacillus velezensis strain SRCM102747]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=283002 C7M25_RS04340 WP_169510469.1 854901..855191(+) (abrB) [Bacillus velezensis strain SRCM102747]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment