Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EB818_RS06130 Genome accession   NZ_CP033335
Coordinates   1190918..1192579 (-) Length   553 a.a.
NCBI ID   WP_076639307.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185918..1197579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB818_RS06095 (EB818_06105) - 1185990..1186151 (+) 162 Protein_1128 DUF4177 domain-containing protein -
  EB818_RS06100 (EB818_06110) - 1186148..1186912 (+) 765 Protein_1129 site-specific integrase -
  EB818_RS06105 (EB818_06115) - 1186991..1187266 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  EB818_RS06110 (EB818_06120) - 1187365..1187952 (-) 588 WP_002989129.1 YpmS family protein -
  EB818_RS06115 (EB818_06125) - 1187930..1188772 (-) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  EB818_RS06120 (EB818_06130) - 1188765..1189604 (-) 840 WP_076639323.1 DegV family protein -
  EB818_RS06125 (EB818_06135) - 1189832..1190746 (-) 915 WP_076639306.1 LPXTG cell wall anchor domain-containing protein -
  EB818_RS06130 (EB818_06140) recN 1190918..1192579 (-) 1662 WP_076639307.1 DNA repair protein RecN Machinery gene
  EB818_RS06135 (EB818_06145) - 1192600..1193070 (-) 471 WP_002983907.1 arginine repressor -
  EB818_RS06140 (EB818_06150) - 1193057..1193884 (-) 828 WP_129322732.1 TlyA family RNA methyltransferase -
  EB818_RS06145 (EB818_06155) - 1193877..1194749 (-) 873 WP_076639308.1 polyprenyl synthetase family protein -
  EB818_RS06150 (EB818_06160) - 1194749..1194964 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  EB818_RS06155 (EB818_06165) xseA 1194942..1196282 (-) 1341 WP_076639309.1 exodeoxyribonuclease VII large subunit -
  EB818_RS06160 (EB818_06170) - 1196435..1197289 (-) 855 WP_010922486.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62241.47 Da        Isoelectric Point: 4.6120

>NTDB_id=283000 EB818_RS06130 WP_076639307.1 1190918..1192579(-) (recN) [Streptococcus pyogenes strain TSPY208]
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRRGANKAEIEGFFSVDATPELVACL
ESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKEN
YQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQEIEFRLDTLNSLTRKYGGNM
NDVLDYYDNIVKEYQLLTGDDLSSGDLEAELKALEKQLVAAATNLSERRHQLAEQLEAEIKAELKELCMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
RHGQVLAISHLPQVIAIADYQYFISKESKEESTISKVRLLTPEERVEEIASMIAGTDMTQAALTQARELLAKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=283000 EB818_RS06130 WP_076639307.1 1190918..1192579(-) (recN) [Streptococcus pyogenes strain TSPY208]
ATGTTATTAGAAATTTCTATTAAAAATTTTGCTATTATTGATGAAATTTCCCTAAATTTTGAAAATGGTATGACGGTTTT
GACGGGTGAAACTGGAGCAGGAAAGTCTATTATCATTGATGCTATGAATATGATGCTTGGTGCGCGTGCTAGTACAGAAG
TGATTCGTCGTGGAGCTAATAAAGCAGAAATTGAGGGGTTCTTTTCGGTAGATGCTACCCCAGAACTGGTTGCGTGTCTG
GAATCATCAGGTATTGCTATGGAAGAAGAACTGATTATTCGCCGGGATATCTTTGCCAATGGCAGAAGCGTGAGCCGCAT
TAATGGTCAGATGGTTAACCTAGCCACCTTAAAACAGGTCGGACAGTTTTTGGTAGATATTCATGGGCAACATGACCAAG
AAGAATTAATGCGACCACAGCTCCACCAGCAAATTTTGGACGCTTTTGGTGATAAGGCTTTTGAGCAATTGAAAGAGAAC
TATCAGCTTATTTTTGATCGTTATAAAAGCTTGCGTCGCCAGGTTATTGACAAACAAAAAAATGAAAAGGAACACAAAGA
TCGTATTGATATGTTGGCCTTTCAGATAGCAGAAATTGAAGCTGCTGCCTTGAGTCGAGGTGAGGACGACCGGTTAAATC
AAGAACGTGATCGCTTAATGAACCACAAACAAATTGCTGATACCCTGACCAATGCCTACGTCATGCTAGATAATGATGAT
TTTTCAAGCCTATCCAATATTCGCTCTAGCATGAATGACTTACTATCAATTGAGCAGTTTGATTCAGAGTACAAAGGGAT
GTCGACTTCGATTTCTGAAGCCTATTATATCCTTGAAGAAGTGAGCAAGCAATTATCAGATACCATTGACCAACTGGATT
TTGATGGTGGGCGATTACAGGAAATTGAATTTCGCTTGGATACACTCAATAGCTTAACCCGTAAATACGGTGGTAATATG
AATGATGTGCTTGACTACTACGATAATATCGTCAAAGAATACCAGCTATTAACAGGAGATGACTTGTCTTCAGGGGATCT
AGAGGCAGAATTGAAAGCCTTAGAAAAACAATTGGTTGCTGCAGCCACTAACTTGAGTGAACGCCGCCATCAATTGGCGG
AGCAATTAGAAGCTGAGATTAAAGCTGAACTTAAGGAACTTTGTATGGAAAAAGCAGATTTCAAAGTTCACTTTACCACA
TCAAAATTCAATCGTGATGGTAATGAAAGCTTGGAATTTTACATCTCTACTAATCCAGGCGAAGGATTCAAGCCCCTTGT
CAAGGTGGCTTCTGGAGGAGAGTTATCACGCCTTATGTTAGCCATCAAGGCTGCTATTTCTAGAAAAGAAGATAAGACGA
GTATTGTTTTTGATGAAGTAGATACAGGTGTTTCTGGTCGCGTTGCGCAAGCCATTGCCCAAAAAATTTATAAAATTGGG
CGACATGGGCAAGTTCTCGCTATTTCACACTTACCTCAAGTTATTGCCATTGCTGATTATCAGTATTTTATTTCTAAAGA
AAGTAAAGAAGAGTCCACCATTTCTAAGGTAAGGTTATTAACTCCTGAAGAACGTGTGGAAGAAATTGCTAGCATGATTG
CAGGAACAGATATGACACAAGCTGCTCTTACGCAGGCTCGTGAACTACTTGCCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.662

100

0.448

Multiple sequence alignment