Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EB818_RS04680 Genome accession   NZ_CP033335
Coordinates   896373..897443 (-) Length   356 a.a.
NCBI ID   WP_032464390.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 891373..902443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB818_RS04660 (EB818_04670) citX 891952..892530 (+) 579 WP_076639661.1 citrate lyase holo-[acyl-carrier protein] synthase -
  EB818_RS04665 (EB818_04675) - 892545..893939 (+) 1395 WP_157663143.1 oxaloacetate decarboxylase subunit alpha -
  EB818_RS04670 (EB818_04680) citC 894049..895101 (-) 1053 WP_129322697.1 [citrate (pro-3S)-lyase] ligase -
  EB818_RS04675 (EB818_04685) - 895190..895672 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  EB818_RS04680 (EB818_04690) xerS 896373..897443 (-) 1071 WP_032464390.1 tyrosine recombinase XerS Machinery gene
  EB818_RS04685 (EB818_04695) - 897913..898611 (+) 699 WP_129322698.1 helix-turn-helix transcriptional regulator -
  EB818_RS04690 (EB818_04700) ffh 898746..900308 (-) 1563 WP_002993302.1 signal recognition particle protein -
  EB818_RS04695 (EB818_04705) - 900323..900655 (-) 333 WP_002989745.1 putative DNA-binding protein -
  EB818_RS04700 (EB818_04710) - 900753..901451 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=282988 EB818_RS04680 WP_032464390.1 896373..897443(-) (xerS) [Streptococcus pyogenes strain TSPY208]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDVT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=282988 EB818_RS04680 WP_032464390.1 896373..897443(-) (xerS) [Streptococcus pyogenes strain TSPY208]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGTACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGTTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803