Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D3W51_RS18200 Genome accession   NZ_CP033250
Coordinates   3742710..3743186 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain ECCHD184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3737710..3748186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3W51_RS18160 (D3W51_18410) - 3737744..3738082 (+) 339 Protein_3564 LysR substrate-binding domain-containing protein -
  D3W51_RS18165 (D3W51_18415) - 3738420..3739739 (+) 1320 WP_000144689.1 site-specific integrase -
  D3W51_RS18170 (D3W51_18420) - 3739832..3740680 (-) 849 WP_001280536.1 DUF4942 domain-containing protein -
  D3W51_RS18175 (D3W51_18425) - 3740765..3740962 (-) 198 WP_000839228.1 DUF957 domain-containing protein -
  D3W51_RS18180 (D3W51_18430) - 3740974..3741462 (-) 489 WP_000761710.1 DUF5983 family protein -
  D3W51_RS18185 (D3W51_18435) - 3741459..3741836 (-) 378 WP_000854695.1 TA system toxin CbtA family protein -
  D3W51_RS18190 (D3W51_18440) - 3741883..3742257 (-) 375 WP_016243360.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D3W51_RS18195 (D3W51_18445) yeeT 3742420..3742641 (-) 222 WP_000692307.1 DUF987 domain-containing protein -
  D3W51_RS18200 (D3W51_18450) radC 3742710..3743186 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  D3W51_RS18205 (D3W51_18455) - 3743202..3743681 (-) 480 WP_000860084.1 antirestriction protein -
  D3W51_RS18210 (D3W51_18460) - 3743763..3744581 (-) 819 WP_001241366.1 DUF932 domain-containing protein -
  D3W51_RS18225 (D3W51_18475) agn43 3744920..3748039 (-) 3120 WP_096097845.1 autotransporter adhesin Ag43 -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=282922 D3W51_RS18200 WP_001186773.1 3742710..3743186(-) (radC) [Escherichia coli strain ECCHD184]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=282922 D3W51_RS18200 WP_001186773.1 3742710..3743186(-) (radC) [Escherichia coli strain ECCHD184]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTGGGTGGCAACCAGGTTTTCTCCTTTGCCGAGCACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment