Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C7M23_RS18725 Genome accession   NZ_CP028209
Coordinates   3659796..3660374 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM102745     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3654796..3665374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS18690 (C7M23_03684) lepB 3654800..3655306 (-) 507 WP_160243267.1 signal peptidase I -
  C7M23_RS18695 (C7M23_03685) yhjE 3655308..3655931 (-) 624 WP_010886465.1 VTT domain-containing protein -
  C7M23_RS18700 (C7M23_03686) - 3656083..3656445 (+) 363 WP_024571727.1 hypothetical protein -
  C7M23_RS18705 (C7M23_03687) yhjC 3656653..3656853 (+) 201 WP_024571728.1 DUF3311 domain-containing protein -
  C7M23_RS18710 (C7M23_03688) yhjB 3656850..3658319 (+) 1470 WP_014479374.1 sodium:solute symporter -
  C7M23_RS18715 (C7M23_03689) yhjA 3658363..3658632 (-) 270 WP_072173850.1 excalibur calcium-binding domain-containing protein -
  C7M23_RS18720 (C7M23_03690) yhxD 3658850..3659749 (+) 900 WP_131227286.1 SDR family oxidoreductase -
  C7M23_RS18725 (C7M23_03691) comK 3659796..3660374 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  C7M23_RS18730 (C7M23_03692) yhzC 3660667..3660900 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  C7M23_RS18735 (C7M23_03693) yhxC 3660928..3661785 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  C7M23_RS18740 (C7M23_03694) comW 3661897..3663426 (+) 1530 WP_131227285.1 FAD-dependent oxidoreductase -
  C7M23_RS18745 (C7M23_03695) hemAT 3663565..3664863 (+) 1299 WP_160243269.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=282909 C7M23_RS18725 WP_003245329.1 3659796..3660374(-) (comK) [Bacillus subtilis strain SRCM102745]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=282909 C7M23_RS18725 WP_003245329.1 3659796..3660374(-) (comK) [Bacillus subtilis strain SRCM102745]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment