Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D3W51_RS08575 Genome accession   NZ_CP033250
Coordinates   1811276..1812703 (-) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain ECCHD184     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1806276..1817703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3W51_RS08545 (D3W51_08715) yeeZ 1806331..1807155 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  D3W51_RS08550 (D3W51_08720) yeeY 1807201..1808130 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  D3W51_RS08555 (D3W51_08725) yoeI 1808345..1808407 (+) 63 WP_010723108.1 membrane protein YoeI -
  D3W51_RS08560 (D3W51_08730) plaP 1808397..1809755 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  D3W51_RS08565 (D3W51_08735) tsuA 1809934..1810992 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  D3W51_RS08570 (D3W51_08740) tsuB 1811006..1811233 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  D3W51_RS08575 (D3W51_08745) sbcB 1811276..1812703 (-) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  D3W51_RS08580 (D3W51_08750) dacD 1812912..1814078 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  D3W51_RS08585 (D3W51_08755) sbmC 1814197..1814670 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  D3W51_RS08590 (D3W51_08760) yeeA 1814869..1815927 (+) 1059 WP_001200891.1 FUSC family protein -
  D3W51_RS08595 (D3W51_08765) tmaR 1816099..1816428 (+) 330 WP_000450409.1 DUF496 family protein -
  D3W51_RS08600 (D3W51_08770) - 1816529..1816711 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D3W51_RS08605 (D3W51_08775) - 1816765..1816911 (+) 147 Protein_1695 transposase domain-containing protein -
  D3W51_RS08610 (D3W51_08780) - 1817200..1817280 (-) 81 Protein_1696 hypothetical protein -
  D3W51_RS08615 (D3W51_08785) - 1817326..1817475 (-) 150 WP_119186839.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=282898 D3W51_RS08575 WP_000980581.1 1811276..1812703(-) (sbcB) [Escherichia coli strain ECCHD184]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=282898 D3W51_RS08575 WP_000980581.1 1811276..1812703(-) (sbcB) [Escherichia coli strain ECCHD184]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579