Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C7M23_RS13290 Genome accession   NZ_CP028209
Coordinates   2527515..2528135 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2522515..2533135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS13270 (C7M23_02605) dnaD 2522806..2523504 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  C7M23_RS13275 (C7M23_02606) nth 2523523..2524182 (+) 660 WP_009967580.1 endonuclease III -
  C7M23_RS13280 (C7M23_02607) ypoC 2524179..2524673 (+) 495 WP_029726783.1 YpoC family protein -
  C7M23_RS13285 (C7M23_02608) ponA 2524749..2527493 (-) 2745 WP_131227529.1 PBP1A family penicillin-binding protein -
  C7M23_RS13290 (C7M23_02609) recU 2527515..2528135 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C7M23_RS13295 (C7M23_02610) yppC 2528176..2529138 (+) 963 WP_131227527.1 DUF2515 domain-containing protein -
  C7M23_RS13300 (C7M23_02611) sspM 2529163..2529267 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C7M23_RS13305 (C7M23_02612) yppD 2529466..2529711 (+) 246 WP_004398488.1 YppD family protein -
  C7M23_RS13310 (C7M23_02613) yppE 2529757..2530128 (+) 372 WP_003246080.1 YppE family protein -
  C7M23_RS13315 (C7M23_02614) yppF 2530167..2530355 (-) 189 WP_003230690.1 YppF family protein -
  C7M23_RS13320 (C7M23_02615) sppG 2530542..2530919 (+) 378 WP_004398696.1 YppG family protein -
  C7M23_RS13325 (C7M23_02616) ypqA 2530940..2531359 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  C7M23_RS13330 (C7M23_02617) ptsA 2531497..2532003 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=282889 C7M23_RS13290 WP_004399067.1 2527515..2528135(-) (recU) [Bacillus subtilis strain SRCM102745]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=282889 C7M23_RS13290 WP_004399067.1 2527515..2528135(-) (recU) [Bacillus subtilis strain SRCM102745]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment