Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C7M23_RS12285 Genome accession   NZ_CP028209
Coordinates   2346663..2347466 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2341663..2352466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS12265 (C7M23_02401) yqxC 2341773..2342618 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  C7M23_RS12270 (C7M23_02402) argR 2342716..2343165 (+) 450 WP_003230265.1 arginine repressor ArgR -
  C7M23_RS12275 (C7M23_02403) recN 2343202..2344932 (+) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  C7M23_RS12280 (C7M23_02404) spoIVB 2345107..2346387 (+) 1281 WP_131227608.1 SpoIVB peptidase -
  C7M23_RS12285 (C7M23_02405) spo0A 2346663..2347466 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  C7M23_RS12290 (C7M23_02407) yqiG 2347930..2349048 (-) 1119 WP_131227606.1 NADH-dependent flavin oxidoreductase -
  C7M23_RS12295 - 2349121..2349273 (-) 153 WP_014480226.1 hypothetical protein -
  C7M23_RS12300 (C7M23_02408) - 2349581..2349877 (+) 297 WP_014480225.1 hypothetical protein -
  C7M23_RS12305 (C7M23_02409) yqiI 2349897..2350517 (+) 621 WP_131227604.1 N-acetylmuramoyl-L-alanine amidase -
  C7M23_RS12310 (C7M23_02410) glpQB 2350596..2351327 (+) 732 WP_160243228.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=282888 C7M23_RS12285 WP_003226427.1 2346663..2347466(+) (spo0A) [Bacillus subtilis strain SRCM102745]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=282888 C7M23_RS12285 WP_003226427.1 2346663..2347466(+) (spo0A) [Bacillus subtilis strain SRCM102745]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment