Detailed information NTG0282886

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D3W51_RS05030
• Genome accession: NZ_CP033250
• Coordinates: 1043339..1044331 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ECCHD184
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1038339..1049331

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3W51_RS05000 (D3W51_05090)	ispD	1038400..1039110 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D3W51_RS05005 (D3W51_05095)	ispF	1039110..1039589 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D3W51_RS05010 (D3W51_05100)	truD	1039586..1040635 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
D3W51_RS05015 (D3W51_05105)	surE	1040616..1041377 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
D3W51_RS05020 (D3W51_05110)	pcm	1041371..1041997 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
D3W51_RS05025 (D3W51_05115)	nlpD	1042182..1043276 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
D3W51_RS05030 (D3W51_05120)	rpoS	1043339..1044331 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
D3W51_RS05035 (D3W51_05125)	ygbN	1044425..1045789 (-)	1365	WP_000104459.1	GntP family transporter	-
D3W51_RS05040 (D3W51_05130)	ygbM	1045878..1046654 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
D3W51_RS05045 (D3W51_05135)	ygbL	1046659..1047297 (-)	639	WP_001278994.1	aldolase	-
D3W51_RS05050 (D3W51_05140)	otnK	1047294..1048556 (-)	1263	Protein_996	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=282886 D3W51_RS05030 WP_000081550.1 1043339..1044331(+) (rpoS) [Escherichia coli strain ECCHD184]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=282886 D3W51_RS05030 WP_000081550.1 1043339..1044331(+) (rpoS) [Escherichia coli strain ECCHD184]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715