Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C7M23_RS10420 Genome accession   NZ_CP028209
Coordinates   2029215..2029961 (+) Length   248 a.a.
NCBI ID   WP_131228346.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2024215..2034961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS10405 (C7M23_02046) - 2024442..2024633 (-) 192 WP_003222590.1 hypothetical protein -
  C7M23_RS10410 (C7M23_02047) valS 2025081..2027723 (+) 2643 WP_004398606.1 valine--tRNA ligase -
  C7M23_RS10415 (C7M23_02048) folC 2027783..2029075 (+) 1293 WP_076458221.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C7M23_RS10420 (C7M23_02049) comC 2029215..2029961 (+) 747 WP_131228346.1 A24 family peptidase Machinery gene
  C7M23_RS10425 (C7M23_02050) spoIIB 2030095..2031093 (+) 999 WP_103803774.1 stage II sporulation protein SpoIIB -
  C7M23_RS10430 (C7M23_02051) maf 2031246..2031815 (+) 570 WP_049141066.1 Maf family nucleotide pyrophosphatase -
  C7M23_RS10435 (C7M23_02052) radC 2031852..2032547 (+) 696 WP_003246034.1 DNA repair protein RadC -
  C7M23_RS10440 (C7M23_02053) mreB 2032639..2033652 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C7M23_RS10445 (C7M23_02054) mreC 2033683..2034555 (+) 873 WP_009967915.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26449.02 Da        Isoelectric Point: 9.7944

>NTDB_id=282869 C7M23_RS10420 WP_131228346.1 2029215..2029961(+) (comC) [Bacillus subtilis strain SRCM102745]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGPSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGATAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=282869 C7M23_RS10420 WP_131228346.1 2029215..2029961(+) (comC) [Bacillus subtilis strain SRCM102745]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCCCGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCACTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGACAGCTGTTCTAACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment