Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C7M23_RS03450 Genome accession   NZ_CP028209
Coordinates   659366..660478 (-) Length   370 a.a.
NCBI ID   WP_131226972.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 654366..665478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS03435 (C7M23_00677) gyrA 654456..656921 (-) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  C7M23_RS03440 (C7M23_00678) gyrB 657132..659048 (-) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C7M23_RS03445 (C7M23_00679) remB 659103..659348 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  C7M23_RS03450 (C7M23_00680) recF 659366..660478 (-) 1113 WP_131226972.1 DNA replication/repair protein RecF Machinery gene
  C7M23_RS03455 (C7M23_00681) rlbA 660494..660709 (-) 216 WP_003226810.1 ribosome maturation protein RlbA -
  C7M23_RS03460 (C7M23_00682) dnaN 660840..661976 (-) 1137 WP_003242509.1 DNA polymerase III subunit beta -
  C7M23_RS03465 (C7M23_00683) dnaA 662165..663505 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  C7M23_RS03470 rpmH 664132..664266 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  C7M23_RS03475 (C7M23_00684) rnpA 664418..664768 (+) 351 WP_003242628.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42346.43 Da        Isoelectric Point: 7.7143

>NTDB_id=282847 C7M23_RS03450 WP_131226972.1 659366..660478(-) (recF) [Bacillus subtilis strain SRCM102745]
MYIQNLELTSYRNYDHAELRFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=282847 C7M23_RS03450 WP_131226972.1 659366..660478(-) (recF) [Bacillus subtilis strain SRCM102745]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCGATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGATGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGAGGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995

Multiple sequence alignment