Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C7M22_RS15255 Genome accession   NZ_CP028208
Coordinates   3026615..3027514 (+) Length   299 a.a.
NCBI ID   WP_160223044.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102744     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3021615..3032514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M22_RS15235 (C7M22_03064) - 3022305..3024008 (+) 1704 WP_052827416.1 hypothetical protein -
  C7M22_RS15240 (C7M22_03065) - 3024005..3024286 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  C7M22_RS15245 (C7M22_03066) sucC 3024461..3025618 (+) 1158 WP_094031703.1 ADP-forming succinate--CoA ligase subunit beta -
  C7M22_RS15250 (C7M22_03067) sucD 3025647..3026549 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  C7M22_RS15255 (C7M22_03068) dprA 3026615..3027514 (+) 900 WP_160223044.1 DNA-processing protein DprA Machinery gene
  C7M22_RS15260 (C7M22_03069) topA 3027696..3029771 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  C7M22_RS15265 (C7M22_03070) trmFO 3029836..3031143 (+) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M22_RS15270 (C7M22_03071) xerC 3031213..3032130 (+) 918 WP_032871470.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32879.04 Da        Isoelectric Point: 8.4593

>NTDB_id=282817 C7M22_RS15255 WP_160223044.1 3026615..3027514(+) (dprA) [Bacillus velezensis strain SRCM102744]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGKKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=282817 C7M22_RS15255 WP_160223044.1 3026615..3027514(+) (dprA) [Bacillus velezensis strain SRCM102744]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAAAAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365

Multiple sequence alignment