Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C7M21_RS14615 Genome accession   NZ_CP028207
Coordinates   2981123..2982022 (-) Length   299 a.a.
NCBI ID   WP_160223044.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102743     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2976123..2987022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M21_RS14600 (C7M21_02929) xerC 2976507..2977424 (-) 918 WP_032871470.1 tyrosine recombinase XerC -
  C7M21_RS14605 (C7M21_02930) trmFO 2977494..2978801 (-) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M21_RS14610 (C7M21_02931) topA 2978866..2980941 (-) 2076 WP_007409771.1 type I DNA topoisomerase -
  C7M21_RS14615 (C7M21_02932) dprA 2981123..2982022 (-) 900 WP_160223044.1 DNA-processing protein DprA Machinery gene
  C7M21_RS14620 (C7M21_02933) sucD 2982088..2982990 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  C7M21_RS14625 (C7M21_02934) sucC 2983019..2984176 (-) 1158 WP_094031703.1 ADP-forming succinate--CoA ligase subunit beta -
  C7M21_RS14630 (C7M21_02935) - 2984351..2984632 (-) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  C7M21_RS14635 (C7M21_02936) - 2984629..2986332 (-) 1704 WP_052827416.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32879.04 Da        Isoelectric Point: 8.4593

>NTDB_id=282741 C7M21_RS14615 WP_160223044.1 2981123..2982022(-) (dprA) [Bacillus velezensis strain SRCM102743]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGKKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=282741 C7M21_RS14615 WP_160223044.1 2981123..2982022(-) (dprA) [Bacillus velezensis strain SRCM102743]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAAAAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365

Multiple sequence alignment