Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C7M21_RS09820 Genome accession   NZ_CP028207
Coordinates   1928401..1929153 (+) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain SRCM102743     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1923401..1934153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M21_RS09805 (C7M21_01966) - 1923624..1923815 (-) 192 WP_003152639.1 hypothetical protein -
  C7M21_RS09810 (C7M21_01967) - 1924268..1926910 (+) 2643 WP_044801613.1 valine--tRNA ligase -
  C7M21_RS09815 (C7M21_01968) - 1926969..1928261 (+) 1293 WP_160223200.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  C7M21_RS09820 (C7M21_01969) comC 1928401..1929153 (+) 753 WP_012118107.1 prepilin peptidase Machinery gene
  C7M21_RS09825 (C7M21_01970) - 1929280..1930281 (+) 1002 WP_160223199.1 SPOR domain-containing protein -
  C7M21_RS09830 (C7M21_01971) - 1930422..1930991 (+) 570 WP_007408164.1 Maf family protein -
  C7M21_RS09835 (C7M21_01972) radC 1931023..1931718 (+) 696 WP_007408165.1 RadC family protein -
  C7M21_RS09840 (C7M21_01973) mreB 1931810..1932823 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  C7M21_RS09845 (C7M21_01974) mreC 1932854..1933717 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=282719 C7M21_RS09820 WP_012118107.1 1928401..1929153(+) (comC) [Bacillus velezensis strain SRCM102743]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=282719 C7M21_RS09820 WP_012118107.1 1928401..1929153(+) (comC) [Bacillus velezensis strain SRCM102743]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment