Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D9Y32_RS12125 Genome accession   NZ_CP033218
Coordinates   2356832..2357305 (+) Length   157 a.a.
NCBI ID   WP_003184615.1    Uniprot ID   Q65FU5
Organism   Bacillus licheniformis strain TCCC 11148     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2351832..2362305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS12100 (D9Y32_12110) - 2353132..2353377 (+) 246 WP_003184624.1 type B 50S ribosomal protein L31 -
  D9Y32_RS12105 (D9Y32_12115) - 2353463..2354494 (-) 1032 WP_009329427.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  D9Y32_RS12110 (D9Y32_12120) - 2354593..2355774 (-) 1182 WP_009329426.1 GTP-binding protein -
  D9Y32_RS12115 (D9Y32_12125) - 2355901..2356470 (+) 570 WP_003184618.1 carbonic anhydrase -
  D9Y32_RS12120 (D9Y32_12130) yidD 2356467..2356694 (-) 228 WP_003184617.1 membrane protein insertion efficiency factor YidD -
  D9Y32_RS12125 (D9Y32_12135) luxS 2356832..2357305 (+) 474 WP_003184615.1 S-ribosylhomocysteine lyase Regulator
  D9Y32_RS24060 - 2357437..2357716 (+) 280 Protein_2337 FixH family protein -
  D9Y32_RS24065 - 2357729..2357947 (+) 219 WP_260677370.1 hypothetical protein -
  D9Y32_RS24070 - 2357951..2358019 (-) 69 Protein_2339 YtzI protein -
  D9Y32_RS12140 (D9Y32_12150) - 2358153..2358590 (+) 438 WP_003184609.1 Dps family protein -
  D9Y32_RS12145 (D9Y32_12155) - 2358742..2359146 (+) 405 WP_003184607.1 holin family protein -
  D9Y32_RS12150 (D9Y32_12160) - 2359194..2359517 (+) 324 WP_003184604.1 hypothetical protein -
  D9Y32_RS12155 (D9Y32_12170) ytkD 2359711..2360188 (+) 478 Protein_2343 RNA deprotection pyrophosphohydrolase -
  D9Y32_RS12160 (D9Y32_12175) - 2360219..2361043 (-) 825 WP_009329424.1 ABC transporter permease -
  D9Y32_RS12165 (D9Y32_12180) - 2361006..2361794 (-) 789 WP_003184598.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17885.47 Da        Isoelectric Point: 5.5531

>NTDB_id=282715 D9Y32_RS12125 WP_003184615.1 2356832..2357305(+) (luxS) [Bacillus licheniformis strain TCCC 11148]
MPSVESFELDHNAVKAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRTYAEKYDHFDIIDIS
PMGCQTGYYLVVSGEPKVEEIVDLLEDTFKEAVEVTEIPAANEKQCGQAKLHDLEGAKRMMRFWLSQNKEDLLKVFG

Nucleotide


Download         Length: 474 bp        

>NTDB_id=282715 D9Y32_RS12125 WP_003184615.1 2356832..2357305(+) (luxS) [Bacillus licheniformis strain TCCC 11148]
ATGCCTTCAGTTGAAAGTTTTGAGCTTGACCATAATGCGGTAAAAGCGCCTTATGTCAGACACTGCGGCGTCCACAAAGT
GGGAACGGACGGCGTCGTCAACAAGTTTGACATCCGTTTTTGCCAGCCGAATAAACAGGCAATGAAACCTGATACGATTC
ATACTTTGGAGCACCTTCTTGCATTTACAATCCGCACATATGCGGAAAAATATGACCACTTTGATATTATCGACATTTCG
CCGATGGGCTGCCAAACGGGCTATTACCTGGTGGTAAGCGGTGAGCCGAAAGTGGAAGAAATCGTTGATTTGCTTGAGGA
TACGTTCAAAGAAGCCGTTGAAGTGACTGAAATTCCGGCGGCTAACGAAAAACAGTGCGGCCAGGCAAAGCTTCACGATC
TTGAAGGCGCAAAGCGCATGATGCGTTTTTGGCTTTCGCAAAATAAAGAAGACCTGCTCAAGGTGTTTGGGTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65FU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

35.802

100

0.369