Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C7M21_RS06035 Genome accession   NZ_CP028207
Coordinates   1184899..1185588 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM102743     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179899..1190588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M21_RS06015 (C7M21_01203) - 1180389..1181465 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  C7M21_RS06020 (C7M21_01204) - 1181564..1182784 (-) 1221 WP_160223301.1 LCP family protein -
  C7M21_RS06025 (C7M21_01205) - 1182789..1183436 (-) 648 WP_061581228.1 YigZ family protein -
  C7M21_RS06030 (C7M21_01206) degS 1183659..1184822 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C7M21_RS06035 (C7M21_01207) degU 1184899..1185588 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M21_RS06040 (C7M21_01208) - 1185686..1186534 (+) 849 WP_003151387.1 DegV family protein -
  C7M21_RS06045 (C7M21_01209) comFA 1186643..1188028 (+) 1386 WP_160223300.1 DEAD/DEAH box helicase Machinery gene
  C7M21_RS06050 (C7M21_01210) - 1188086..1188370 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  C7M21_RS06055 comFC 1188376..1189065 (+) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  C7M21_RS06060 (C7M21_01212) - 1189139..1189558 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C7M21_RS06065 (C7M21_01213) flgM 1189628..1189894 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M21_RS06070 (C7M21_01214) - 1189909..1190391 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=282707 C7M21_RS06035 WP_003219701.1 1184899..1185588(+) (degU) [Bacillus velezensis strain SRCM102743]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=282707 C7M21_RS06035 WP_003219701.1 1184899..1185588(+) (degU) [Bacillus velezensis strain SRCM102743]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment