Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D9Y32_RS08085 Genome accession   NZ_CP033218
Coordinates   1586576..1587214 (-) Length   212 a.a.
NCBI ID   WP_003186252.1    Uniprot ID   Q65DI5
Organism   Bacillus licheniformis strain TCCC 11148     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581576..1592214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS08065 (D9Y32_08075) - 1582037..1583386 (-) 1350 WP_044822547.1 M28 family peptidase -
  D9Y32_RS08070 (D9Y32_08080) - 1583616..1584374 (+) 759 WP_142782308.1 IclR family transcriptional regulator -
  D9Y32_RS08075 (D9Y32_08085) - 1584392..1585345 (+) 954 WP_003186265.1 sugar kinase -
  D9Y32_RS08080 (D9Y32_08090) - 1585374..1586459 (-) 1086 Protein_1554 MMPL family transporter -
  D9Y32_RS08085 (D9Y32_08095) vraR 1586576..1587214 (-) 639 WP_003186252.1 response regulator transcription factor Regulator
  D9Y32_RS08090 (D9Y32_08100) - 1587207..1588425 (-) 1219 Protein_1556 sensor histidine kinase -
  D9Y32_RS23530 - 1588696..1588866 (+) 171 WP_003186246.1 hypothetical protein -
  D9Y32_RS08095 (D9Y32_08105) - 1588863..1589039 (+) 177 WP_085959885.1 hypothetical protein -
  D9Y32_RS08100 (D9Y32_08110) - 1589161..1590024 (+) 864 WP_003186243.1 glycosyltransferase family 8 protein -
  D9Y32_RS08105 (D9Y32_08115) - 1590163..1591110 (+) 948 WP_142782309.1 phosphoglycerate dehydrogenase -
  D9Y32_RS08110 (D9Y32_08120) - 1591141..1591521 (-) 381 WP_003186240.1 VOC family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23718.78 Da        Isoelectric Point: 6.0356

>NTDB_id=282693 D9Y32_RS08085 WP_003186252.1 1586576..1587214(-) (vraR) [Bacillus licheniformis strain TCCC 11148]
MNKVLIVDDHLVVREGLKLLIETNDHYIIIGEAENGKAAVRLADELKPDIILMDLYMPEMSGLEAIKLIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGVLTLD

Nucleotide


Download         Length: 639 bp        

>NTDB_id=282693 D9Y32_RS08085 WP_003186252.1 1586576..1587214(-) (vraR) [Bacillus licheniformis strain TCCC 11148]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCACTA
CATCATCATAGGAGAGGCGGAAAATGGCAAAGCAGCAGTTCGCCTTGCAGATGAATTAAAACCGGATATTATTCTCATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAAGCCATTAAACTAATAAAAGAAAAACACGACATCCCCATCATTATTTTG
ACTACGTATAATGAAGATCACTTAATGATCGAAGGAATTGAATTAGGGGCGAAAGGATATCTATTGAAGGATACAAGTTC
AGAAACCCTTTTTCATACGATGGACGCAGCAATAAGAGGAAACGTGCTATTGCAGCCTGATATCTTAAAACGTCTGCAAG
AAATCCAATTGGAGCGGATGAAGAAGCAGAGCAGTGATACGCAGCTGACAGAAAAGGAAGTCATAGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGAGAACAGTAAAGTCTAGACTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAAGCAGTGACGATTGCCATGCAAAGAGGCGTTCTGACATTAGACTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65DI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.528

0.363

Multiple sequence alignment