Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | C7M20_RS17775 | Genome accession | NZ_CP028206 |
| Coordinates | 3623637..3624782 (+) | Length | 381 a.a. |
| NCBI ID | WP_015240777.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain SRCM102742 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3618637..3629782
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7M20_RS17755 (C7M20_03584) | - | 3619534..3619962 (-) | 429 | WP_007407634.1 | DUF1934 domain-containing protein | - |
| C7M20_RS17760 (C7M20_03585) | - | 3620116..3620628 (+) | 513 | Protein_3491 | bacteriocin biosynthesis protein AlbG | - |
| C7M20_RS17765 (C7M20_03586) | - | 3620635..3622011 (-) | 1377 | WP_046702210.1 | YncE family protein | - |
| C7M20_RS17770 (C7M20_03587) | - | 3622051..3623406 (-) | 1356 | WP_015240776.1 | YncE family protein | - |
| C7M20_RS17775 (C7M20_03588) | rapF | 3623637..3624782 (+) | 1146 | WP_015240777.1 | tetratricopeptide repeat protein | Regulator |
| C7M20_RS17780 (C7M20_03589) | phrF | 3624766..3624885 (+) | 120 | WP_015240778.1 | PhrC/PhrF family phosphatase-inhibitory pheromone | Regulator |
| C7M20_RS17785 (C7M20_03590) | - | 3625083..3625286 (+) | 204 | WP_007407640.1 | helix-turn-helix transcriptional regulator | - |
| C7M20_RS17790 (C7M20_03591) | - | 3625300..3625503 (+) | 204 | WP_007407641.1 | hypothetical protein | - |
| C7M20_RS17795 (C7M20_03592) | - | 3625538..3625723 (+) | 186 | WP_007407642.1 | DUF4177 domain-containing protein | - |
| C7M20_RS17800 (C7M20_03593) | - | 3625909..3626190 (+) | 282 | WP_007407643.1 | hypothetical protein | - |
| C7M20_RS17805 (C7M20_03594) | - | 3626234..3626746 (+) | 513 | WP_023357177.1 | stage II sporulation protein M | - |
| C7M20_RS17815 (C7M20_03596) | - | 3627337..3627555 (-) | 219 | WP_160223555.1 | LuxR C-terminal-related transcriptional regulator | - |
| C7M20_RS17820 (C7M20_03597) | speB | 3627723..3628595 (-) | 873 | WP_007614448.1 | agmatinase | - |
| C7M20_RS17825 (C7M20_03598) | speE | 3628654..3629484 (-) | 831 | WP_003151052.1 | spermidine synthase | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 45572.57 Da Isoelectric Point: 4.5155
>NTDB_id=282679 C7M20_RS17775 WP_015240777.1 3623637..3624782(+) (rapF) [Bacillus velezensis strain SRCM102742]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYEIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYEIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
Nucleotide
Download Length: 1146 bp
>NTDB_id=282679 C7M20_RS17775 WP_015240777.1 3623637..3624782(+) (rapF) [Bacillus velezensis strain SRCM102742]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTTGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACATATTTTTCT
ATGGATTATGCCCGGCAGGCTTATGAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTTGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACATATTTTTCT
ATGGATTATGCCCGGCAGGCTTATGAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
78.74 |
100 |
0.787 |
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
57.105 |
99.738 |
0.57 |