Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   D9Y32_RS01555 Genome accession   NZ_CP033218
Coordinates   307387..308505 (-) Length   372 a.a.
NCBI ID   WP_003179978.1    Uniprot ID   Q65M68
Organism   Bacillus licheniformis strain TCCC 11148     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 302387..313505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS01540 (D9Y32_01545) aroD 303652..304416 (-) 765 WP_003179983.1 type I 3-dehydroquinate dehydratase -
  D9Y32_RS01545 (D9Y32_01550) - 304804..305022 (-) 219 WP_003179982.1 hypothetical protein -
  D9Y32_RS01550 (D9Y32_01555) - 305269..306594 (-) 1326 WP_142782086.1 TGS domain-containing protein -
  D9Y32_RS01555 (D9Y32_01560) rapC 307387..308505 (-) 1119 WP_003179978.1 Rap family tetratricopeptide repeat protein Regulator
  D9Y32_RS01560 (D9Y32_01565) - 308831..310389 (+) 1559 Protein_313 T7SS effector LXG polymorphic toxin -
  D9Y32_RS01565 (D9Y32_01570) - 310406..310846 (+) 441 WP_009329006.1 DUF6756 family protein -
  D9Y32_RS01570 (D9Y32_01575) - 311077..311373 (-) 297 WP_142782087.1 DUF3800 domain-containing protein -
  D9Y32_RS01575 (D9Y32_01580) - 311639..313363 (+) 1725 Protein_316 T7SS effector LXG polymorphic toxin -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 43946.57 Da        Isoelectric Point: 6.5966

>NTDB_id=282665 D9Y32_RS01555 WP_003179978.1 307387..308505(-) (rapC) [Bacillus licheniformis strain TCCC 11148]
METIPSSEVGIKINRWYNEIQKLNVIEAERLKAEVHLAIERMEEDQDLLSYYQLMNFRHELMLEYLFPAEKKLSKSDYLR
EIEGQGRKLSGLLEYYFSFFTGMYHFSRGKYIKAIKAYRAAEKKLTKVSDKIEKAEFYYKMAEVFYHMKQTHMSMYYVSL
AYDIYKSYDAYVIRRINCLFVVAGNYIDLSTHDQALPHLLSAKESAEDIQNKAIVAKALLNVAYCYNAMERPTKAIEYFH
KAIDVAKEIKAKELTQAYYDLALIHFRNNENIEGRKFYEKALESARVFEDELFLCLLDVLEALFIKSANKSEVLETMKPL
RDSRGYPYLEELALEAALFYTRNERPNDSIFFYDQMVQAQKQIKRGDFLYEI

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=282665 D9Y32_RS01555 WP_003179978.1 307387..308505(-) (rapC) [Bacillus licheniformis strain TCCC 11148]
TTGGAGACTATCCCGTCTTCAGAAGTTGGAATCAAAATAAACCGCTGGTACAACGAAATTCAAAAATTAAACGTAATAGA
AGCAGAACGATTAAAGGCGGAAGTTCACTTAGCTATAGAAAGAATGGAAGAAGATCAGGACTTGCTTTCCTATTATCAGC
TTATGAATTTTAGACATGAGTTAATGTTGGAATATCTTTTCCCGGCAGAAAAAAAGCTGAGCAAATCTGATTATCTTAGG
GAAATTGAGGGACAGGGAAGAAAATTGTCAGGCTTGCTCGAATACTATTTTTCCTTTTTCACCGGAATGTATCATTTTTC
TCGCGGAAAATACATAAAGGCAATCAAGGCATATAGAGCAGCAGAAAAAAAGTTGACGAAAGTTTCAGATAAAATAGAAA
AGGCTGAATTCTATTATAAGATGGCGGAAGTGTTTTATCATATGAAACAGACTCATATGTCAATGTATTATGTGTCTCTC
GCTTATGATATTTATAAATCCTATGATGCATATGTGATTCGAAGAATTAATTGTCTATTCGTTGTTGCTGGGAATTACAT
TGATTTATCAACCCATGATCAAGCTTTACCGCATCTTTTAAGCGCTAAGGAATCCGCGGAAGACATTCAAAACAAGGCGA
TCGTTGCAAAGGCTCTTTTAAATGTAGCATATTGTTATAATGCAATGGAGAGACCAACAAAAGCTATTGAATACTTTCAT
AAGGCGATTGATGTAGCAAAGGAAATAAAGGCAAAAGAACTGACTCAGGCTTATTATGATTTGGCATTAATTCACTTTCG
AAATAACGAAAATATTGAAGGACGAAAATTTTATGAAAAGGCGCTTGAAAGTGCGCGGGTATTTGAAGATGAATTATTCC
TGTGTCTGTTGGATGTTTTAGAGGCACTGTTTATAAAATCAGCTAATAAGTCAGAGGTACTAGAAACAATGAAACCATTA
CGGGATAGTCGTGGTTACCCCTATCTTGAGGAACTGGCATTAGAAGCAGCTCTATTCTATACTAGGAATGAGCGGCCAAA
TGATTCCATATTTTTTTATGATCAGATGGTGCAGGCTCAGAAACAAATCAAAAGGGGCGACTTTCTGTATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)

Tetratricopeptide repeat (TPR_12)

(215-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65M68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.379
  rapF Bacillus subtilis subsp. subtilis str. 168

36.702

100

0.371