Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C7M20_RS08565 Genome accession   NZ_CP028206
Coordinates   1772721..1773155 (+) Length   144 a.a.
NCBI ID   WP_160223458.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102742     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1767721..1778155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M20_RS08560 (C7M20_01724) - 1771221..1772432 (-) 1212 WP_160223062.1 cytochrome P450 family protein -
  C7M20_RS08565 (C7M20_01725) nucA/comI 1772721..1773155 (+) 435 WP_160223458.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C7M20_RS08570 (C7M20_01726) - 1773215..1773970 (+) 756 WP_160223064.1 YoaK family protein -
  C7M20_RS08575 (C7M20_01727) - 1774004..1774366 (-) 363 WP_007410383.1 hypothetical protein -
  C7M20_RS08580 (C7M20_01728) - 1774559..1775887 (-) 1329 WP_012117603.1 S8 family peptidase -
  C7M20_RS08585 (C7M20_01729) - 1776066..1776299 (+) 234 WP_015239897.1 hypothetical protein -
  C7M20_RS08590 (C7M20_01730) - 1776555..1777262 (+) 708 WP_007410381.1 poly-gamma-glutamate hydrolase family protein -
  C7M20_RS08595 (C7M20_01731) - 1777322..1777774 (+) 453 WP_014305039.1 OsmC family protein -
  C7M20_RS08600 (C7M20_01732) - 1777788..1778141 (-) 354 WP_007410379.1 DMT family transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15601.52 Da        Isoelectric Point: 7.2418

>NTDB_id=282643 C7M20_RS08565 WP_160223458.1 1772721..1773155(+) (nucA/comI) [Bacillus velezensis strain SRCM102742]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISTGHSEICTIDRNGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=282643 C7M20_RS08565 WP_160223458.1 1772721..1773155(+) (nucA/comI) [Bacillus velezensis strain SRCM102742]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGACAGGTCATTCTGAGATTTGTACAATTGATCGGAACGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493

Multiple sequence alignment