Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   C7M19_RS08340 Genome accession   NZ_CP028205
Coordinates   1727125..1728288 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain SRCM102741     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722125..1733288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M19_RS08310 (C7M19_01681) - 1722389..1722808 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C7M19_RS08315 comFC 1722882..1723571 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  C7M19_RS08320 (C7M19_01683) - 1723577..1723861 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  C7M19_RS08325 (C7M19_01684) comFA 1723919..1725304 (-) 1386 WP_160223300.1 DEAD/DEAH box helicase Machinery gene
  C7M19_RS08330 (C7M19_01685) - 1725413..1726261 (-) 849 WP_003151387.1 DegV family protein -
  C7M19_RS08335 (C7M19_01686) degU 1726359..1727048 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M19_RS08340 (C7M19_01687) degS 1727125..1728288 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C7M19_RS08345 (C7M19_01688) - 1728511..1729158 (+) 648 WP_061581228.1 YigZ family protein -
  C7M19_RS08350 (C7M19_01689) - 1729163..1730383 (+) 1221 WP_160223301.1 LCP family protein -
  C7M19_RS08355 (C7M19_01690) - 1730482..1731558 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  C7M19_RS08360 (C7M19_01691) tuaH 1731691..1732887 (-) 1197 WP_076424609.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=282566 C7M19_RS08340 WP_007407484.1 1727125..1728288(-) (degS) [Bacillus velezensis strain SRCM102741]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=282566 C7M19_RS08340 WP_007407484.1 1727125..1728288(-) (degS) [Bacillus velezensis strain SRCM102741]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTTGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment