Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C7M18_RS14545 Genome accession   NZ_CP028204
Coordinates   2864294..2864578 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102755     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2859294..2869578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M18_RS14525 (C7M18_02926) - 2860537..2861445 (+) 909 WP_109566911.1 ketopantoate reductase family protein -
  C7M18_RS14530 (C7M18_02927) - 2861476..2862708 (-) 1233 WP_007409644.1 aminopeptidase -
  C7M18_RS14535 (C7M18_02928) - 2862809..2862943 (-) 135 WP_003154559.1 protein YkpC -
  C7M18_RS14540 (C7M18_02929) mreBH 2863016..2864023 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  C7M18_RS14545 (C7M18_02930) abrB 2864294..2864578 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  C7M18_RS14550 (C7M18_02931) - 2864751..2866055 (+) 1305 WP_014417634.1 ATP-binding protein -
  C7M18_RS14555 (C7M18_02932) - 2866057..2866884 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  C7M18_RS14560 (C7M18_02933) ktrC 2866925..2867590 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  C7M18_RS14565 (C7M18_02934) ade 2867739..2869472 (+) 1734 WP_065180240.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=282513 C7M18_RS14545 WP_024085249.1 2864294..2864578(+) (abrB) [Bacillus velezensis strain SRCM102755]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=282513 C7M18_RS14545 WP_024085249.1 2864294..2864578(+) (abrB) [Bacillus velezensis strain SRCM102755]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCACTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment