Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C7M18_RS00535 Genome accession   NZ_CP028204
Coordinates   100345..101097 (-) Length   250 a.a.
NCBI ID   WP_094296064.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102755     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 95345..106097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M18_RS00510 (C7M18_00099) mreC 95781..96644 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  C7M18_RS00515 (C7M18_00100) mreB 96675..97688 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  C7M18_RS00520 (C7M18_00101) radC 97780..98475 (-) 696 WP_007408165.1 RadC family protein -
  C7M18_RS00525 (C7M18_00102) - 98507..99076 (-) 570 WP_012118105.1 Maf family protein -
  C7M18_RS00530 (C7M18_00103) - 99217..100218 (-) 1002 WP_065180394.1 SPOR domain-containing protein -
  C7M18_RS00535 (C7M18_00104) comC 100345..101097 (-) 753 WP_094296064.1 prepilin peptidase Machinery gene
  C7M18_RS00540 (C7M18_00105) - 101237..102529 (-) 1293 WP_029973369.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  C7M18_RS00545 (C7M18_00106) - 102588..105230 (-) 2643 WP_022552877.1 valine--tRNA ligase -
  C7M18_RS00550 (C7M18_00107) - 105683..105874 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27294.02 Da        Isoelectric Point: 9.4293

>NTDB_id=282461 C7M18_RS00535 WP_094296064.1 100345..101097(-) (comC) [Bacillus velezensis strain SRCM102755]
MLLFLFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=282461 C7M18_RS00535 WP_094296064.1 100345..101097(-) (comC) [Bacillus velezensis strain SRCM102755]
GTGCTTTTGTTTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGTCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.661

99.2

0.572

Multiple sequence alignment