Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C7M17_RS10090 Genome accession   NZ_CP028202
Coordinates   1897221..1897799 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM102754     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1892221..1902799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS10055 (C7M17_01994) lepB 1892230..1892736 (-) 507 WP_003233128.1 signal peptidase I -
  C7M17_RS10060 (C7M17_01995) yhjE 1892738..1893361 (-) 624 WP_010886465.1 VTT domain-containing protein -
  C7M17_RS10065 (C7M17_01996) - 1893513..1893884 (+) 372 WP_046160244.1 hypothetical protein -
  C7M17_RS10070 (C7M17_01997) yhjC 1894083..1894283 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C7M17_RS10075 (C7M17_01998) yhjB 1894280..1895749 (+) 1470 WP_122895185.1 sodium:solute symporter -
  C7M17_RS10080 (C7M17_01999) yhjA 1895793..1896062 (-) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  C7M17_RS10085 (C7M17_02000) yhxD 1896275..1897174 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  C7M17_RS10090 (C7M17_02001) comK 1897221..1897799 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  C7M17_RS10095 (C7M17_02002) yhzC 1898092..1898325 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  C7M17_RS10100 (C7M17_02003) yhxC 1898353..1899210 (-) 858 WP_160245288.1 SDR family oxidoreductase -
  C7M17_RS10105 (C7M17_02004) comW 1899322..1900851 (+) 1530 WP_122895186.1 FAD-dependent oxidoreductase -
  C7M17_RS10110 (C7M17_02005) hemAT 1900990..1902288 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=282419 C7M17_RS10090 WP_003245329.1 1897221..1897799(-) (comK) [Bacillus subtilis strain SRCM102754]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=282419 C7M17_RS10090 WP_003245329.1 1897221..1897799(-) (comK) [Bacillus subtilis strain SRCM102754]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment