Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EAF06_RS02525 Genome accession   NZ_CP033158
Coordinates   510480..510956 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain CM IVRI KOL-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 505480..515956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAF06_RS02505 (EAF06_02640) - 505631..508447 (+) 2817 WP_164529492.1 Ag43/Cah family autotransporter adhesin -
  EAF06_RS02510 (EAF06_02645) - 508518..508713 (+) 196 Protein_498 DUF905 family protein -
  EAF06_RS02515 (EAF06_02655) - 508831..509649 (+) 819 WP_001234729.1 DUF932 domain-containing protein -
  EAF06_RS02520 (EAF06_02665) - 509991..510464 (+) 474 WP_000855059.1 antirestriction protein -
  EAF06_RS02525 (EAF06_02670) radC 510480..510956 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  EAF06_RS02530 (EAF06_02675) - 511019..511240 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  EAF06_RS02535 (EAF06_02680) - 511403..511771 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EAF06_RS02540 (EAF06_02685) - 511861..512238 (+) 378 WP_000854761.1 TA system toxin CbtA family protein -
  EAF06_RS02545 (EAF06_02690) - 512235..512383 (+) 149 Protein_505 DUF5983 family protein -
  EAF06_RS02550 (EAF06_02695) - 512483..512563 (+) 81 Protein_506 hypothetical protein -
  EAF06_RS02555 (EAF06_02700) - 512994..514533 (-) 1540 Protein_507 IS66-like element ISEc22 family transposase -
  EAF06_RS02560 (EAF06_02705) tnpB 514582..514929 (-) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  EAF06_RS02565 (EAF06_02710) - 515051..515329 (-) 279 WP_001341328.1 transposase -
  EAF06_RS25180 - 515410..515634 (+) 225 Protein_510 transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=282416 EAF06_RS02525 WP_001186774.1 510480..510956(+) (radC) [Escherichia coli strain CM IVRI KOL-1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=282416 EAF06_RS02525 WP_001186774.1 510480..510956(+) (radC) [Escherichia coli strain CM IVRI KOL-1]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGGC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment