Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C7M17_RS08140 Genome accession   NZ_CP028202
Coordinates   1530252..1530716 (+) Length   154 a.a.
NCBI ID   WP_160245249.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1525252..1535716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS08120 (C7M17_01603) fadH 1526440..1527204 (-) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -
  C7M17_RS08125 (C7M17_01604) ppeE 1527347..1528207 (+) 861 WP_003232400.1 metallophosphoesterase -
  C7M17_RS08130 (C7M17_01605) ltdD 1528264..1528758 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  C7M17_RS08135 (C7M17_01606) ykuC 1528834..1530126 (+) 1293 WP_014479656.1 MFS transporter -
  C7M17_RS08140 (C7M17_01607) kre 1530252..1530716 (+) 465 WP_160245249.1 YkyB family protein Regulator
  C7M17_RS08145 (C7M17_01608) cheV 1530760..1531671 (-) 912 WP_041054806.1 chemotaxis protein CheV -
  C7M17_RS08150 (C7M17_01609) - 1531875..1532036 (+) 162 WP_003245246.1 hypothetical protein -
  C7M17_RS08155 (C7M17_01610) dapX 1532238..1533419 (+) 1182 WP_122894584.1 aminotransferase A -
  C7M17_RS08160 (C7M17_01611) kinA 1533429..1535249 (-) 1821 WP_160245250.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17925.79 Da        Isoelectric Point: 10.3545

>NTDB_id=282407 C7M17_RS08140 WP_160245249.1 1530252..1530716(+) (kre) [Bacillus subtilis strain SRCM102754]
MDDHAYMKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=282407 C7M17_RS08140 WP_160245249.1 1530252..1530716(+) (kre) [Bacillus subtilis strain SRCM102754]
ATGGACGACCATGCATATATGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

99.351

100

0.994

Multiple sequence alignment