Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   C7M17_RS08040 Genome accession   NZ_CP028202
Coordinates   1514259..1514840 (-) Length   193 a.a.
NCBI ID   WP_160245248.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509259..1519840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS08015 (C7M17_01582) mobB 1509655..1510176 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  C7M17_RS08020 (C7M17_01583) glp 1510137..1511429 (-) 1293 WP_122894580.1 gephyrin-like molybdotransferase Glp -
  C7M17_RS08025 (C7M17_01584) moeB 1511447..1512466 (-) 1020 WP_046160343.1 molybdopterin-synthase adenylyltransferase MoeB -
  C7M17_RS08030 (C7M17_01585) mobA 1512517..1513116 (-) 600 WP_046160342.1 molybdenum cofactor guanylyltransferase -
  C7M17_RS08035 (C7M17_01586) cse15 1513253..1514218 (+) 966 WP_046160341.1 spore protein Cse15 -
  C7M17_RS08040 (C7M17_01587) rok 1514259..1514840 (-) 582 WP_160245248.1 transcriptional regulator Rok Regulator
  C7M17_RS08045 (C7M17_01588) ykuV 1515306..1515752 (-) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  C7M17_RS08050 (C7M17_01589) ahpA 1515822..1516364 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  C7M17_RS08055 (C7M17_01590) mscT 1516601..1517404 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  C7M17_RS08060 (C7M17_01591) ykuS 1517441..1517686 (-) 246 WP_003232382.1 YkuS family protein -
  C7M17_RS08065 (C7M17_01592) dapI 1517748..1518872 (-) 1125 WP_043857415.1 N-acetyldiaminopimelate deacetylase -
  C7M17_RS08070 (C7M17_01593) dapD 1518942..1519652 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22055.06 Da        Isoelectric Point: 9.8633

>NTDB_id=282406 C7M17_RS08040 WP_160245248.1 1514259..1514840(-) (rok) [Bacillus subtilis strain SRCM102754]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QSQQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=282406 C7M17_RS08040 WP_160245248.1 1514259..1514840(-) (rok) [Bacillus subtilis strain SRCM102754]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAATCACAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACG
AAGAAGAAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACA
ACGCGGCGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTT
ATGCAAAGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATC
TGCAGAATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

98.964

100

0.99

Multiple sequence alignment