Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M17_RS05310 Genome accession   NZ_CP028202
Coordinates   900743..901873 (-) Length   376 a.a.
NCBI ID   WP_032725937.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 899541..926511 900743..901873 within 0


Gene organization within MGE regions


Location: 899541..926511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS05295 - 899541..899696 (+) 156 Protein_1066 T7SS effector LXG polymorphic toxin -
  C7M17_RS22535 (C7M17_01035) - 899691..900049 (+) 359 Protein_1067 UV damage repair protein UvrX -
  C7M17_RS22540 (C7M17_01036) - 900272..900472 (+) 201 WP_021481449.1 hypothetical protein -
  C7M17_RS05305 (C7M17_01037) - 900610..900753 (-) 144 WP_153801665.1 hypothetical protein -
  C7M17_RS05310 (C7M17_01038) rapC 900743..901873 (-) 1131 WP_032725937.1 tetratricopeptide repeat protein Regulator
  C7M17_RS22730 - 902007..902153 (-) 147 Protein_1071 phage holin -
  C7M17_RS05320 - 902529..902804 (-) 276 Protein_1072 SOS response-associated peptidase family protein -
  C7M17_RS05325 (C7M17_01039) - 902985..903350 (-) 366 WP_071577897.1 hypothetical protein -
  C7M17_RS05330 (C7M17_01041) - 903996..904697 (+) 702 WP_029318058.1 hypothetical protein -
  C7M17_RS05335 (C7M17_01043) - 905222..905590 (+) 369 WP_122895464.1 hypothetical protein -
  C7M17_RS05340 (C7M17_01044) - 905697..906206 (+) 510 WP_057957789.1 MepB family protein -
  C7M17_RS05345 (C7M17_01045) - 906312..907910 (+) 1599 WP_095843755.1 hypothetical protein -
  C7M17_RS05350 (C7M17_01046) yobD 907960..908298 (-) 339 WP_122895463.1 helix-turn-helix transcriptional regulator -
  C7M17_RS05355 (C7M17_01047) yozV 908469..908708 (+) 240 WP_014477028.1 TM2 domain-containing protein -
  C7M17_RS05360 (C7M17_01048) xynA 909344..909985 (+) 642 WP_015714073.1 endo-1,4-beta-xylanase XynA -
  C7M17_RS05365 (C7M17_01049) ppsA 910445..913045 (+) 2601 WP_160245199.1 phosphoenolpyruvate synthase -
  C7M17_RS05370 (C7M17_01050) - 913345..913608 (-) 264 WP_072174146.1 hypothetical protein -
  C7M17_RS22735 - 913722..913871 (+) 150 Protein_1083 hypothetical protein -
  C7M17_RS22555 - 914006..914185 (-) 180 WP_134157025.1 hypothetical protein -
  C7M17_RS05375 (C7M17_01051) yobA 914402..914752 (+) 351 WP_131227491.1 DUF3221 domain-containing protein -
  C7M17_RS05380 (C7M17_01052) bla 915241..916161 (-) 921 WP_160245200.1 class A beta-lactamase -
  C7M17_RS05385 (C7M17_01053) yoaZ 916417..917049 (+) 633 WP_015251945.1 type 1 glutamine amidotransferase family protein -
  C7M17_RS05390 (C7M17_01054) - 917313..917744 (+) 432 WP_038429093.1 hypothetical protein -
  C7M17_RS05395 (C7M17_01055) yoaV 917917..918795 (-) 879 WP_033883971.1 DMT family transporter -
  C7M17_RS05400 (C7M17_01056) yoaU 918896..919768 (+) 873 WP_116316667.1 LysR family transcriptional regulator -
  C7M17_RS05405 (C7M17_01057) yoaT 919886..920680 (-) 795 WP_116316668.1 DUF817 domain-containing protein -
  C7M17_RS05410 (C7M17_01058) yozG 920786..921035 (-) 250 Protein_1092 helix-turn-helix transcriptional regulator -
  C7M17_RS05415 (C7M17_01059) yoaS 921045..921527 (-) 483 WP_015251949.1 DUF2975 domain-containing protein -
  C7M17_RS05420 (C7M17_01060) yoaR 921872..922783 (+) 912 WP_015714063.1 VanW family protein -
  C7M17_RS05425 (C7M17_01061) - 922885..923382 (+) 498 WP_122895455.1 hypothetical protein -
  C7M17_RS22560 - 923487..923586 (+) 100 Protein_1096 hypothetical protein -
  C7M17_RS05435 - 923716..923891 (+) 176 Protein_1097 YoaP domain-containing protein -
  C7M17_RS05440 - 923888..924043 (+) 156 WP_122895454.1 hypothetical protein -
  C7M17_RS05445 (C7M17_01063) yoaO 924068..924550 (+) 483 WP_122895453.1 DUF4944 domain-containing protein -
  C7M17_RS05450 (C7M17_01064) oxdD 924673..925851 (+) 1179 WP_122895452.1 oxalate decarboxylase -
  C7M17_RS05455 (C7M17_01065) - 926067..926371 (+) 305 Protein_1101 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44394.15 Da        Isoelectric Point: 5.7041

>NTDB_id=282400 C7M17_RS05310 WP_032725937.1 900743..901873(-) (rapC) [Bacillus subtilis strain SRCM102754]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=282400 C7M17_RS05310 WP_032725937.1 900743..901873(-) (rapC) [Bacillus subtilis strain SRCM102754]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment