Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C7M17_RS03655 Genome accession   NZ_CP028202
Coordinates   641839..642459 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 636839..647459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS03635 (C7M17_00711) dnaD 637130..637828 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  C7M17_RS03640 (C7M17_00712) nth 637847..638506 (+) 660 WP_009967580.1 endonuclease III -
  C7M17_RS03645 (C7M17_00713) ypoC 638503..638997 (+) 495 WP_009967579.1 YpoC family protein -
  C7M17_RS03650 (C7M17_00714) ponA 639073..641817 (-) 2745 WP_160245113.1 PBP1A family penicillin-binding protein -
  C7M17_RS03655 (C7M17_00715) recU 641839..642459 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C7M17_RS03660 (C7M17_00716) yppC 642500..643462 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  C7M17_RS03665 (C7M17_00717) sspM 643487..643591 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C7M17_RS03670 (C7M17_00718) yppD 643790..644035 (+) 246 WP_004398488.1 YppD family protein -
  C7M17_RS03675 (C7M17_00719) yppE 644081..644452 (+) 372 WP_003246080.1 YppE family protein -
  C7M17_RS03680 (C7M17_00720) yppF 644491..644679 (-) 189 WP_003230690.1 YppF family protein -
  C7M17_RS03685 (C7M17_00721) sppG 644867..645244 (+) 378 WP_004398696.1 YppG family protein -
  C7M17_RS03690 (C7M17_00722) ypqA 645265..645684 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  C7M17_RS03695 (C7M17_00723) ptsA 645822..646328 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=282399 C7M17_RS03655 WP_004399067.1 641839..642459(-) (recU) [Bacillus subtilis strain SRCM102754]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=282399 C7M17_RS03655 WP_004399067.1 641839..642459(-) (recU) [Bacillus subtilis strain SRCM102754]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment