Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D0871_RS16025 Genome accession   NZ_CP033141
Coordinates   3189781..3190254 (+) Length   157 a.a.
NCBI ID   WP_023624904.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3184781..3195254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS15995 (D0871_15995) cytR 3184852..3185859 (+) 1008 WP_005481416.1 DNA-binding transcriptional regulator CytR Regulator
  D0871_RS16000 (D0871_16000) ftsN 3186035..3186580 (+) 546 WP_005481405.1 cell division protein FtsN -
  D0871_RS16005 (D0871_16005) hslV 3186745..3187296 (+) 552 WP_005489705.1 ATP-dependent protease subunit HslV -
  D0871_RS16010 (D0871_16010) hslU 3187320..3188651 (+) 1332 WP_005489452.1 HslU--HslV peptidase ATPase subunit -
  D0871_RS16015 (D0871_16015) - 3189076..3189300 (-) 225 WP_029864913.1 hypothetical protein -
  D0871_RS16020 (D0871_16020) - 3189488..3189610 (-) 123 WP_122016051.1 AlpA family phage regulatory protein -
  D0871_RS16025 (D0871_16025) radC 3189781..3190254 (+) 474 WP_023624904.1 DNA repair protein RadC Machinery gene
  D0871_RS16030 (D0871_16030) - 3190251..3190682 (+) 432 WP_029864910.1 DUF2787 family protein -
  D0871_RS16035 (D0871_16035) - 3190797..3191621 (+) 825 WP_053317964.1 WYL domain-containing protein -
  D0871_RS16040 (D0871_16040) - 3191618..3192781 (+) 1164 WP_053317963.1 hypothetical protein -
  D0871_RS16045 (D0871_16045) - 3193148..3193804 (-) 657 WP_021451684.1 inovirus Gp2 family protein -
  D0871_RS16050 (D0871_16050) - 3194153..3194983 (+) 831 WP_241214654.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17589.05 Da        Isoelectric Point: 7.2350

>NTDB_id=282398 D0871_RS16025 WP_023624904.1 3189781..3190254(+) (radC) [Vibrio parahaemolyticus strain 160807]
MSTNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPDATKEYVRFKLASAEHEVFALLLLDSQHRVIEFKSLFKGT
IDSASVYPREVVKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALALVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=282398 D0871_RS16025 WP_023624904.1 3189781..3190254(+) (radC) [Vibrio parahaemolyticus strain 160807]
ATGTCGACCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCCGCTGAAATCCT
CGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCGGATGCAACCAAAGAGTATGTTCGATTCAAACTAGCCAGCG
CTGAACACGAGGTTTTCGCTCTGCTACTGCTTGATAGCCAACACCGTGTCATCGAATTTAAATCACTCTTTAAAGGCACC
ATTGATTCCGCTAGCGTTTATCCTCGCGAGGTCGTCAAAAGCGTTTTGGAAGTGAATGCAGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCCGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTCATCGACGCTTTAGCGTTAG
TGGATGTCAGGGTGCTTGACCATATCGTTGTCGGAGAAAGCAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.715

87.261

0.408

Multiple sequence alignment