Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C7M17_RS02680 Genome accession   NZ_CP028202
Coordinates   465729..466532 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 460729..471532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS02660 (C7M17_00516) yqxC 460839..461684 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  C7M17_RS02665 (C7M17_00517) argR 461782..462231 (+) 450 WP_003230265.1 arginine repressor ArgR -
  C7M17_RS02670 (C7M17_00518) recN 462268..463998 (+) 1731 WP_129110524.1 DNA repair protein RecN Machinery gene
  C7M17_RS02675 (C7M17_00519) spoIVB 464173..465453 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  C7M17_RS02680 (C7M17_00520) spo0A 465729..466532 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  C7M17_RS02685 (C7M17_00522) yqiG 466998..468116 (-) 1119 WP_122894902.1 NADH-dependent flavin oxidoreductase -
  C7M17_RS02690 - 468189..468341 (-) 153 WP_014480226.1 hypothetical protein -
  C7M17_RS02695 (C7M17_00523) - 468649..468945 (+) 297 WP_014480225.1 hypothetical protein -
  C7M17_RS02700 (C7M17_00524) yqiI 468965..469585 (+) 621 WP_122894903.1 N-acetylmuramoyl-L-alanine amidase -
  C7M17_RS02705 (C7M17_00525) glpQB 469664..470395 (+) 732 WP_101502442.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=282398 C7M17_RS02680 WP_003226427.1 465729..466532(+) (spo0A) [Bacillus subtilis strain SRCM102754]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=282398 C7M17_RS02680 WP_003226427.1 465729..466532(+) (spo0A) [Bacillus subtilis strain SRCM102754]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment