Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C7M17_RS00350 Genome accession   NZ_CP028202
Coordinates   75402..76148 (+) Length   248 a.a.
NCBI ID   WP_080474433.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 70402..81148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS00335 (C7M17_00066) - 70628..70819 (-) 192 WP_003222590.1 hypothetical protein -
  C7M17_RS00340 (C7M17_00067) valS 71267..73909 (+) 2643 WP_017697542.1 valine--tRNA ligase -
  C7M17_RS00345 (C7M17_00068) folC 73969..75261 (+) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C7M17_RS00350 (C7M17_00069) comC 75402..76148 (+) 747 WP_080474433.1 A24 family peptidase Machinery gene
  C7M17_RS00355 (C7M17_00070) spoIIB 76282..77280 (+) 999 WP_122895581.1 stage II sporulation protein SpoIIB -
  C7M17_RS00360 (C7M17_00071) maf 77433..78002 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C7M17_RS00365 (C7M17_00072) radC 78039..78734 (+) 696 WP_041351757.1 DNA repair protein RadC -
  C7M17_RS00370 (C7M17_00073) mreB 78826..79839 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C7M17_RS00375 (C7M17_00074) mreC 79870..80742 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=282379 C7M17_RS00350 WP_080474433.1 75402..76148(+) (comC) [Bacillus subtilis strain SRCM102754]
MLSLLFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=282379 C7M17_RS00350 WP_080474433.1 75402..76148(+) (comC) [Bacillus subtilis strain SRCM102754]
ATGCTATCCCTTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGATCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment