Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C7M16_RS19360 Genome accession   NZ_CP028201
Coordinates   3822531..3823049 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM102753     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3817531..3828049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS19330 (C7M16_03811) yyaJ 3818038..3819393 (+) 1356 WP_160221941.1 MFS transporter -
  C7M16_RS19335 (C7M16_03812) maa 3819427..3819981 (-) 555 WP_120363564.1 sugar O-acetyltransferase -
  C7M16_RS19340 (C7M16_03813) yyaH 3819999..3820379 (-) 381 WP_003244460.1 VOC family protein -
  C7M16_RS19345 (C7M16_03814) ccpB 3820435..3821370 (-) 936 WP_160221942.1 transcriptional regulator CcpB -
  C7M16_RS19350 (C7M16_03815) xth 3821428..3822186 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  C7M16_RS19355 (C7M16_03816) rpsR 3822248..3822487 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  C7M16_RS19360 (C7M16_03817) ssbA 3822531..3823049 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  C7M16_RS19365 (C7M16_03818) rpsF 3823090..3823377 (-) 288 WP_160221943.1 30S ribosomal protein S6 -
  C7M16_RS19370 (C7M16_03819) ychF 3823488..3824588 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  C7M16_RS19375 (C7M16_03820) yyaE 3824715..3826718 (-) 2004 WP_160221944.1 molybdopterin-dependent oxidoreductase -
  C7M16_RS19380 (C7M16_03821) yyzM 3826769..3826975 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=282371 C7M16_RS19360 WP_003219228.1 3822531..3823049(-) (ssbA) [Bacillus subtilis strain SRCM102753]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=282371 C7M16_RS19360 WP_003219228.1 3822531..3823049(-) (ssbA) [Bacillus subtilis strain SRCM102753]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment