Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   SPCG_RS09545 Genome accession   NC_010582
Coordinates   1825467..1826426 (+) Length   319 a.a.
NCBI ID   WP_000777248.1    Uniprot ID   A0A0H2ZMI3
Organism   Streptococcus pneumoniae CGSP14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1820467..1831426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPCG_RS09515 (SPCG_1836) - 1820667..1821431 (-) 765 WP_000082889.1 nuclear transport factor 2 family protein -
  SPCG_RS09520 (SPCG_1837) - 1821435..1821878 (-) 444 WP_000655202.1 MarR family winged helix-turn-helix transcriptional regulator -
  SPCG_RS09525 (SPCG_1838) - 1822560..1822856 (-) 297 WP_000840136.1 bacteriocin immunity protein -
  SPCG_RS09530 (SPCG_1839) pepA 1822878..1823942 (-) 1065 WP_000209198.1 glutamyl aminopeptidase -
  SPCG_RS09535 (SPCG_1840) galE 1824343..1825044 (+) 702 WP_000167829.1 UDP-glucose 4-epimerase GalE -
  SPCG_RS14230 (SPCG_1841) - 1825060..1825170 (+) 111 WP_001108391.1 hypothetical protein -
  SPCG_RS09545 (SPCG_1842) ceuB 1825467..1826426 (+) 960 WP_000777248.1 ABC transporter permease Machinery gene
  SPCG_RS09550 (SPCG_1843) - 1826416..1827372 (+) 957 WP_001193674.1 iron chelate uptake ABC transporter family permease subunit -
  SPCG_RS09555 (SPCG_1844) - 1827369..1828121 (+) 753 WP_000764304.1 ABC transporter ATP-binding protein -
  SPCG_RS09560 (SPCG_1845) - 1828217..1829182 (+) 966 WP_000858246.1 siderophore ABC transporter substrate-binding protein -
  SPCG_RS09565 (SPCG_1846) yidD 1829407..1829649 (-) 243 WP_000821614.1 membrane protein insertion efficiency factor YidD -
  SPCG_RS09570 (SPCG_1847) - 1829649..1830371 (-) 723 WP_001222228.1 pseudouridine synthase -
  SPCG_RS09575 (SPCG_1848) scpB 1830358..1830927 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35418.29 Da        Isoelectric Point: 9.7465

>NTDB_id=28237 SPCG_RS09545 WP_000777248.1 1825467..1826426(+) (ceuB) [Streptococcus pneumoniae CGSP14]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=28237 SPCG_RS09545 WP_000777248.1 1825467..1826426(+) (ceuB) [Streptococcus pneumoniae CGSP14]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTGGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCTTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains


Predicted by InterProScan.

(10-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2ZMI3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.419

97.179

0.364


Multiple sequence alignment