Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C7M16_RS11710 Genome accession   NZ_CP028201
Coordinates   2331665..2332075 (-) Length   136 a.a.
NCBI ID   WP_160221688.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2326665..2337075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS11680 - 2326752..2326892 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  C7M16_RS11685 (C7M16_02309) yqeF 2327198..2327929 (-) 732 WP_029317882.1 SGNH/GDSL hydrolase family protein -
  C7M16_RS11690 (C7M16_02310) cwlH 2328181..2328933 (-) 753 WP_160221685.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  C7M16_RS11695 (C7M16_02311) yqeD 2329120..2329746 (+) 627 WP_160221686.1 TVP38/TMEM64 family protein -
  C7M16_RS11700 (C7M16_02312) gnd 2329765..2330658 (-) 894 WP_043857850.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  C7M16_RS11705 (C7M16_02313) yqeB 2330910..2331632 (+) 723 WP_160221687.1 DUF308 domain-containing protein -
  C7M16_RS11710 (C7M16_02314) nucA/comI 2331665..2332075 (-) 411 WP_160221688.1 sporulation-specific Dnase NucB Machinery gene
  C7M16_RS11715 (C7M16_02315) sigK 2332271..2332999 (+) 729 WP_013308023.1 RNA polymerase sporulation sigma factor SigK -
  C7M16_RS11720 (C7M16_02316) - 2333569..2334249 (-) 681 WP_160221689.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  C7M16_RS11725 (C7M16_02317) - 2334380..2335723 (+) 1344 WP_160221690.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14994.06 Da        Isoelectric Point: 5.1853

>NTDB_id=282346 C7M16_RS11710 WP_160221688.1 2331665..2332075(-) (nucA/comI) [Bacillus subtilis strain SRCM102753]
MKKWMAGLFLAAAVLLCLMVPQQIQGASLYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=282346 C7M16_RS11710 WP_160221688.1 2331665..2332075(-) (nucA/comI) [Bacillus subtilis strain SRCM102753]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTTGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTACCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529

Multiple sequence alignment