Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C7M16_RS11460 Genome accession   NZ_CP028201
Coordinates   2288225..2288992 (-) Length   255 a.a.
NCBI ID   WP_160221682.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2283225..2293992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS11440 (C7M16_02260) ppsR 2283399..2284211 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  C7M16_RS11445 (C7M16_02261) ccpN 2284237..2284875 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  C7M16_RS11450 (C7M16_02262) glyS 2285008..2287047 (-) 2040 WP_069964217.1 glycine--tRNA ligase subunit beta -
  C7M16_RS11455 (C7M16_02263) glyQ 2287040..2287927 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  C7M16_RS11460 (C7M16_02264) recO 2288225..2288992 (-) 768 WP_160221682.1 DNA repair protein RecO Machinery gene
  C7M16_RS11465 (C7M16_02265) yqzL 2289029..2289172 (-) 144 WP_003230053.1 YqzL family protein -
  C7M16_RS11470 (C7M16_02266) era 2289320..2290225 (-) 906 WP_003230051.1 GTPase Era -
  C7M16_RS11475 (C7M16_02267) - 2290206..2290616 (-) 411 WP_032722130.1 cytidine deaminase -
  C7M16_RS11480 (C7M16_02268) unpK 2290735..2291106 (-) 372 WP_160221683.1 diacylglycerol kinase family protein -
  C7M16_RS11485 (C7M16_02269) ybeY 2291087..2291560 (-) 474 WP_032722131.1 rRNA maturation RNase YbeY -
  C7M16_RS11490 (C7M16_02270) pgpH 2291561..2293696 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29336.00 Da        Isoelectric Point: 8.3080

>NTDB_id=282342 C7M16_RS11460 WP_160221682.1 2288225..2288992(-) (recO) [Bacillus subtilis strain SRCM102753]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=282342 C7M16_RS11460 WP_160221682.1 2288225..2288992(-) (recO) [Bacillus subtilis strain SRCM102753]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAAACGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

98.824

100

0.988

Multiple sequence alignment