Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C7M16_RS09875 Genome accession   NZ_CP028201
Coordinates   1991647..1992267 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1986647..1997267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS09835 (C7M16_01937) ptsA 1987778..1988284 (-) 507 WP_160221656.1 PTS glucose transporter subunit IIA -
  C7M16_RS09840 (C7M16_01938) ypqA 1988422..1988841 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  C7M16_RS09845 (C7M16_01939) sppG 1988862..1989239 (-) 378 WP_014477159.1 YppG family protein -
  C7M16_RS09850 (C7M16_01940) yppF 1989427..1989615 (+) 189 WP_003230690.1 YppF family protein -
  C7M16_RS09855 (C7M16_01941) yppE 1989654..1990025 (-) 372 WP_128422294.1 YppE family protein -
  C7M16_RS09860 (C7M16_01942) yppD 1990071..1990316 (-) 246 WP_015251831.1 YppD family protein -
  C7M16_RS09865 sspM 1990515..1990619 (+) 105 WP_128422295.1 acid-soluble spore protein SspM -
  C7M16_RS09870 (C7M16_01943) yppC 1990644..1991606 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  C7M16_RS09875 (C7M16_01944) recU 1991647..1992267 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C7M16_RS09880 (C7M16_01945) ponA 1992289..1995033 (+) 2745 WP_160221657.1 PBP1A family penicillin-binding protein -
  C7M16_RS09885 (C7M16_01946) ypoC 1995109..1995603 (-) 495 WP_009967579.1 YpoC family protein -
  C7M16_RS09890 (C7M16_01947) nth 1995600..1996259 (-) 660 WP_009967580.1 endonuclease III -
  C7M16_RS09895 (C7M16_01948) dnaD 1996278..1996976 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=282330 C7M16_RS09875 WP_004399067.1 1991647..1992267(+) (recU) [Bacillus subtilis strain SRCM102753]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=282330 C7M16_RS09875 WP_004399067.1 1991647..1992267(+) (recU) [Bacillus subtilis strain SRCM102753]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment