Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   D0871_RS00855 Genome accession   NZ_CP033141
Coordinates   166566..167795 (+) Length   409 a.a.
NCBI ID   WP_031841715.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 161566..172795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS00810 (D0871_00810) - 161866..162195 (-) 330 WP_015297474.1 DUF2500 domain-containing protein -
  D0871_RS00815 (D0871_00815) - 162437..162805 (+) 369 WP_005489749.1 hypothetical protein -
  D0871_RS26810 - 162868..163047 (-) 180 WP_005458791.1 hypothetical protein -
  D0871_RS00830 (D0871_00830) - 163782..164402 (+) 621 WP_005481960.1 lysoplasmalogenase -
  D0871_RS00835 (D0871_00835) - 164472..164693 (+) 222 WP_015297472.1 YecH family metal-binding protein -
  D0871_RS00840 (D0871_00840) - 164813..165397 (+) 585 WP_005455144.1 YhgN family NAAT transporter -
  D0871_RS00845 (D0871_00845) - 165451..165717 (-) 267 WP_005496405.1 DUF1145 domain-containing protein -
  D0871_RS00850 (D0871_00850) rsmD 165743..166342 (-) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  D0871_RS00855 (D0871_00855) pilA 166566..167795 (+) 1230 WP_031841715.1 signal recognition particle-docking protein FtsY Machinery gene
  D0871_RS00860 (D0871_00860) ftsE 167818..168492 (+) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  D0871_RS00865 (D0871_00865) ftsX 168482..169450 (+) 969 WP_023623318.1 permease-like cell division protein FtsX -
  D0871_RS00870 (D0871_00870) rpoH 169626..170486 (+) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  D0871_RS00880 (D0871_00880) glpE 170978..171298 (+) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  D0871_RS00885 (D0871_00885) glpG 171298..172140 (+) 843 WP_005496414.1 rhomboid family intramembrane serine protease GlpG -
  D0871_RS00890 (D0871_00890) - 172200..172610 (-) 411 WP_005460376.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44555.13 Da        Isoelectric Point: 4.2583

>NTDB_id=282326 D0871_RS00855 WP_031841715.1 166566..167795(+) (pilA) [Vibrio parahaemolyticus strain 160807]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQTQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKII
NNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAA
GDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKID
DSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEF
IDALFSREE

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=282326 D0871_RS00855 WP_031841715.1 166566..167795(+) (pilA) [Vibrio parahaemolyticus strain 160807]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCAGCAAACCGAAGAGGTTGCTGAGCAAGCTCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTT
CGCTCGCCTTAAACGCAGCCTTAGCCGTACGAAAGCGAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAA
TCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATC
AACAACCTGACAGAAAAAGCCTCTCGTGGTGATCTGAAAGATGGCGAAGCTCTTTATGGTCTGCTGAAAGAAGAAATGGC
GGAGATTCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTGGTGTGA
ATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCT
GGCGATACTTTCCGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCA
TACTGGCGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATCGCCG
ATACGGCGGGTCGTCTACAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGTGTGATGAAGAAAATTGAT
GATTCTGCACCACATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAG
TGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTG
ATCAGTTTAGTATTCCAATTCGCTACATTGGTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTT
ATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(125-186)

SRP54-type protein, GTPase domain (SRP54)

(206-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.072

92.176

0.452

Multiple sequence alignment