Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   C7M16_RS06590 Genome accession   NZ_CP028201
Coordinates   1279983..1280558 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274983..1285558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS06560 (C7M16_01292) dapD 1275170..1275880 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  C7M16_RS06565 (C7M16_01293) dapI 1275950..1277074 (+) 1125 WP_160221548.1 N-acetyldiaminopimelate deacetylase -
  C7M16_RS06570 (C7M16_01294) ykuS 1277136..1277381 (+) 246 WP_003232382.1 YkuS family protein -
  C7M16_RS06575 (C7M16_01295) mscT 1277418..1278221 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  C7M16_RS06580 (C7M16_01296) ahpA 1278458..1279000 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  C7M16_RS06585 (C7M16_01297) ykuV 1279071..1279517 (+) 447 WP_014476671.1 thiol-disulfide oxidoreductase YkuV -
  C7M16_RS06590 (C7M16_01298) rok 1279983..1280558 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  C7M16_RS06595 (C7M16_01299) cse15 1280599..1281564 (-) 966 WP_160221549.1 spore protein Cse15 -
  C7M16_RS06600 (C7M16_01300) mobA 1281701..1282300 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  C7M16_RS06605 (C7M16_01301) moeB 1282351..1283370 (+) 1020 WP_044052540.1 molybdopterin-synthase adenylyltransferase MoeB -
  C7M16_RS06610 (C7M16_01302) glp 1283388..1284680 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  C7M16_RS06615 (C7M16_01303) mobB 1284641..1285162 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=282323 C7M16_RS06590 WP_003232378.1 1279983..1280558(+) (rok) [Bacillus subtilis strain SRCM102753]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=282323 C7M16_RS06590 WP_003232378.1 1279983..1280558(+) (rok) [Bacillus subtilis strain SRCM102753]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment