Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C7M16_RS06490 Genome accession   NZ_CP028201
Coordinates   1264109..1264573 (-) Length   154 a.a.
NCBI ID   WP_086343783.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1259109..1269573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS06470 (C7M16_01274) kinA 1259575..1261395 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  C7M16_RS06475 (C7M16_01275) dapX 1261406..1262587 (-) 1182 WP_014479654.1 aminotransferase A -
  C7M16_RS06480 (C7M16_01276) - 1262789..1262950 (-) 162 WP_003245246.1 hypothetical protein -
  C7M16_RS06485 (C7M16_01277) cheV 1263154..1264065 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  C7M16_RS06490 (C7M16_01278) kre 1264109..1264573 (-) 465 WP_086343783.1 YkyB family protein Regulator
  C7M16_RS06495 (C7M16_01279) ykuC 1264699..1265991 (-) 1293 WP_014479656.1 MFS transporter -
  C7M16_RS06500 (C7M16_01280) ltdD 1266067..1266561 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  C7M16_RS06505 (C7M16_01281) ppeE 1266618..1267478 (-) 861 WP_003232400.1 metallophosphoesterase -
  C7M16_RS06510 (C7M16_01282) fadH 1267621..1268385 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17865.68 Da        Isoelectric Point: 10.3545

>NTDB_id=282322 C7M16_RS06490 WP_086343783.1 1264109..1264573(-) (kre) [Bacillus subtilis strain SRCM102753]
MDDHAYAKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=282322 C7M16_RS06490 WP_086343783.1 1264109..1264573(-) (kre) [Bacillus subtilis strain SRCM102753]
ATGGACGACCATGCATATGCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

99.351

100

0.994

Multiple sequence alignment