Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D0871_RS00185 Genome accession   NZ_CP033141
Coordinates   35096..35575 (+) Length   159 a.a.
NCBI ID   WP_102590855.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 30096..40575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS00170 (D0871_00170) - 31629..32858 (+) 1230 WP_102590852.1 tyrosine-type recombinase/integrase -
  D0871_RS27250 - 33156..33284 (+) 129 WP_017097008.1 hypothetical protein -
  D0871_RS00175 (D0871_00175) - 33442..33612 (+) 171 WP_194710503.1 hypothetical protein -
  D0871_RS00180 (D0871_00180) - 34215..34985 (+) 771 WP_102590854.1 ubiquinol-cytochrome C chaperone family protein -
  D0871_RS00185 (D0871_00185) radC 35096..35575 (+) 480 WP_102590855.1 DNA repair protein RadC Machinery gene
  D0871_RS00190 (D0871_00190) - 35575..36009 (+) 435 WP_102590856.1 DUF2787 family protein -
  D0871_RS00195 (D0871_00195) - 36081..36773 (+) 693 WP_122015945.1 hypothetical protein -
  D0871_RS00200 (D0871_00200) - 37040..37447 (+) 408 WP_241214663.1 DUF2787 domain-containing protein -
  D0871_RS00205 (D0871_00205) - 37562..38323 (+) 762 WP_122015946.1 WYL domain-containing protein -
  D0871_RS00210 (D0871_00210) - 38320..38541 (+) 222 WP_102590859.1 hypothetical protein -
  D0871_RS00215 (D0871_00215) - 38627..38875 (+) 249 WP_102590860.1 hypothetical protein -
  D0871_RS00220 (D0871_00220) - 38950..39552 (+) 603 WP_102590861.1 hypothetical protein -
  D0871_RS00225 (D0871_00225) - 39569..40471 (+) 903 WP_102590862.1 LPD25 domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17728.30 Da        Isoelectric Point: 5.5418

>NTDB_id=282322 D0871_RS00185 WP_102590855.1 35096..35575(+) (radC) [Vibrio parahaemolyticus strain 160807]
MSTQLPTITYEFSEPVTALQILEKAAEILEQSFSQGDVYTNPNLVKSFLSCKLAHYEREVFGVMFLDSQHQLLVFEELFQ
GTVDAASIYPREVVKAALKHNAAAVIFAHNHPSKVADPSQADRRITRRLVDALALVDIRVLDHIVVGGECVSFAEKGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=282322 D0871_RS00185 WP_102590855.1 35096..35575(+) (radC) [Vibrio parahaemolyticus strain 160807]
ATGTCAACTCAACTGCCCACCATTACCTACGAGTTTTCAGAGCCTGTCACCGCTTTGCAAATCCTCGAAAAAGCCGCTGA
AATTCTTGAGCAAAGCTTTAGTCAAGGTGATGTCTACACCAACCCTAATCTTGTTAAGTCTTTCCTTAGCTGCAAGCTCG
CGCATTATGAACGTGAAGTCTTTGGCGTGATGTTCTTAGACAGTCAGCATCAATTGCTGGTTTTTGAAGAGCTGTTTCAA
GGCACTGTTGATGCCGCCTCGATTTACCCGCGAGAAGTGGTCAAAGCGGCGCTTAAGCACAATGCCGCCGCCGTGATTTT
TGCGCATAACCATCCTTCCAAAGTCGCCGACCCTTCTCAAGCAGACCGACGCATTACACGACGTTTGGTTGATGCGCTGG
CATTGGTGGACATCCGAGTGCTCGACCACATTGTGGTGGGCGGAGAATGTGTGTCTTTTGCTGAAAAAGGGTGGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.571

88.05

0.428

Multiple sequence alignment