Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C7M16_RS04565 Genome accession   NZ_CP028201
Coordinates   904688..905266 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 899688..910266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS04545 (C7M16_00891) hemAT 900199..901497 (-) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -
  C7M16_RS04550 (C7M16_00892) comW 901636..903165 (-) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  C7M16_RS04555 (C7M16_00893) yhxC 903277..904134 (+) 858 WP_160221474.1 SDR family oxidoreductase -
  C7M16_RS04560 (C7M16_00894) yhzC 904162..904395 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  C7M16_RS04565 (C7M16_00895) comK 904688..905266 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  C7M16_RS04570 (C7M16_00896) yhxD 905313..906212 (-) 900 WP_076457899.1 SDR family oxidoreductase -
  C7M16_RS04575 (C7M16_00897) yhjA 906429..906698 (+) 270 WP_160221475.1 excalibur calcium-binding domain-containing protein -
  C7M16_RS04580 (C7M16_00898) yhjB 906741..908210 (-) 1470 WP_122895185.1 sodium:solute symporter -
  C7M16_RS04585 (C7M16_00899) yhjC 908207..908407 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C7M16_RS04590 (C7M16_00900) - 908606..908977 (-) 372 WP_160221476.1 hypothetical protein -
  C7M16_RS04595 (C7M16_00901) yhjE 909129..909752 (+) 624 WP_010886465.1 VTT domain-containing protein -
  C7M16_RS04600 (C7M16_00902) lepB 909754..910260 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=282310 C7M16_RS04565 WP_029317573.1 904688..905266(+) (comK) [Bacillus subtilis strain SRCM102753]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=282310 C7M16_RS04565 WP_029317573.1 904688..905266(+) (comK) [Bacillus subtilis strain SRCM102753]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCACTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment